Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCAAGATGGGAGTGCACGGTCTCTGGGAACTTTTGGCCCCTGTCGGTCGCCGTGTGTCTGTCGAGACTCTTGCCGGAAAACGACTCGCCATAGgttcatcgtaaccctagcttgaacccttgccctaaaacccacatcatttctgatacgaattttaatcgtattgttctgcag

Basic information

species Vitis vinifera
transcript Vv14s0066g01630.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0066g01630.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA01G16370.1 (Glycine max), 5'ss of exon 1
------AGCAAGATGGGAGTGCACGGTCTCTGGGAACTTTTGGCCCCTGTCGGTCGCCGTGTGTCTGTCGAGACTCTTGCCGGAAAACGACTCGCCATAGgttcatcgt--aaccctagcttgaacccttgccctaaaacccacatcatttctgat--acgaattttaatcgtattgttctgcag------
      | ||  |||||||| |||||||||||||||||  | ||||| ||||||||||| || || ||||| || ||||||||||||   || ||| | ||| |  | |  |||||||   |     ||| | ||    ||||  ||||     |   ||  | |||     | || |     |       
CGCTGCAACACAATGGGAGTCCACGGTCTCTGGGAACTCCTCGCCCCCGTCGGTCGCCGCGTCTCCGTCGAAACCCTTGCCGGAAAAACCCTAGCCGTTGgtactccctcaaaccctaa--tactttctttctctctctcccatttcataaacaaataaccgactttttcatttttctcgcataatttcag