1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CAACCATTTTCGCTTCCCAGTTTCTCAGAGGAGTGCTTGGACTCGGAAGCTCGGACCCAGATGTTTTTCCCAATACCCACCCCCATTTCAGAATCAAAAGgtttgagctttgatcttcattttacatgttcttttaatcatttatccctagttttagttctacattgtgcattttctgaagtcaaattttgactgatgtg...
species | Vitis vinifera |
transcript | Vv14s0066g01410.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCGGACCCAGATGTTTTTCCCAATACCCACCCCCATTTCAGAATCAAAAG AAAGCGAAGTCCTTTTCCTTGAAGGAATGTGCAATTTCTATAGCTTTGGCGEST: gi|110372810|gb|EC937002.1|EC937002
genomic: TCGGACCCAGATGTTTTTCCCAATACCCACCCCCATTTCAGAATCAAAAGgtttgagctt ... ttttgagcagAAAGCGAAGTCCTTTTCCTTGAAGGAATGTGCAATTTCTATAGCTTTGGCG
EST: TCGGACCCAGATGTTTTTCCCAATACCCACCCCCATTTCAGAATCAAAAG AAAGCGAAGTCCTTTTCCTTGAAGGAATGTGCAATTTCTATAGCTTTGGCGEST: gi|351034441|gb|FQ463254.1|FQ463254
genomic: TCGGACCCAGATGTTTTTCCCAATACCCACCCCCATTTCAGAATCAAAAGgtttgagctt ... ttttgagcagAAAGCGAAGTCCTTTTCCTTGAAGGAATGTGCAATTTCTATAGCTTTGGCG
EST: TCGGACCCAGATGTTTTTCCCAATACCCACCCCCATTTCAGAATCAAAAG AAAGCGAAGTCCTTTTCCTTGAAGGAATGTGCAATTTCTATAGCTTTGGCGEST: gi|351013037|gb|FQ433764.1|FQ433764
genomic: TCGGACCCAGATGTTTTTCCCAATACCCACCCCCATTTCAGAATCAAAAGgtttgagctt ... ttttgagcagAAAGCGAAGTCCTTTTCCTTGAAGGAATGTGCAATTTCTATAGCTTTGGCG
EST: TCGGACCCAGATGTTTTTCCCAATACCCACCCCCATTTCAGAATCAAAAG AAAGCGAAGTCCTTTTCCTTGAAGGAATGTGCAATTTCTATAGCTTTGGCGEST: gi|161706998|gb|FC055106.1|FC055106
genomic: TCGGACCCAGATGTTTTTCCCAATACCCACCCCCATTTCAGAATCAAAAGgtttgagctt ... ttttgagcagAAAGCGAAGTCCTTTTCCTTGAAGGAATGTGCAATTTCTATAGCTTTGGCG
EST: TCGGACCCAGATGTTTTTCCCAATACCCACCCCCATTTCAGAATCAAAAG AAAGCGAAGTCCTTTTCCTTGAAGGAATGTGCAATTTCTATAGCTTTGGCGEST: gi|349826215|gb|FQ416020.1|FQ416020
genomic: TCGGACCCAGATGTTTTTCCCAATACCCACCCCCATTTCAGAATCAAAAGgtttgagctt ... ttttgagcagAAAGCGAAGTCCTTTTCCTTGAAGGAATGTGCAATTTCTATAGCTTTGGCG
EST: TCGGACCCAGATGTTTTTCCCAATACCCACCCCCATTTCAGAATCAAAAG AAAGCGAAGTCCTTTTCCTTGAAGGAATGTGCAATTTCTATAGCTTTGGCGEST: gi|110395323|gb|EC960981.1|EC960981
genomic: TCGGACCCAGATGTTTTTCCCAATACCCACCCCCATTTCAGAATCAAAAGgtttgagctt ... ttttgagcagAAAGCGAAGTCCTTTTCCTTGAAGGAATGTGCAATTTCTATAGCTTTGGCG
EST: TCGGACCCAGATGTTTTTCCCAATACCCACCCCCATTTCAGAATCAAAAG AAAGCGAAGTCCTTTTCCTTGAAGGAATGTGCAATTTCTATAGCTTTGGCGEST: gi|77580476|gb|DV219125.1|DV219125
genomic: TCGGACCCAGATGTTTTTCCCAATACCCACCCCCATTTCAGAATCAAAAGgtttgagctt ... ttttgagcagAAAGCGAAGTCCTTTTCCTTGAAGGAATGTGCAATTTCTATAGCTTTGGCG
EST: TCGGACCCAGATGTTTTTCCCAATACCCACCCCCATTTCAGAATCAAAAG AAAGCGAAGTCCTTTTCCTTGAAGGAATGTGCAATTTCTATAGCTTTGGCG
genomic: TCGGACCCAGATGTTTTTCCCAATACCCACCCCCATTTCAGAATCAAAAGgtttgagctt ... ttttgagcagAAAGCGAAGTCCTTTTCCTTGAAGGAATGTGCAATTTCTATAGCTTTGGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAACCATTTTCGCTTCCCAGTTTCTCAGAGGAGTGCTTGGACTCGGAAGCTCGGACCCAGATGTTTTTCCCAATACCCACCCCCATTTCAGAATCAAAAGgtttgagctttgatcttcattttacatgttcttttaatcatttatccctagttttagttctacattgtgcattttctgaagtcaaattttgactgatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagtcaaa