1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ACCGGAATCCTCGAAACCTCGAAGGATCTGGATCGATTGAGGAGAGAGCAAGACGAGATACTCCAGGAGATAAACAAGTTGCATAAAAAGCTTCAATCTGgtgcgtctctgaaacccgatctctacctcgatgctccacctcttcatagaagttttgtggttgaatgtgctaaattttgcatattgtcacacataaattt...
species | Vitis vinifera |
transcript | Vv14s0066g00210.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGACGAGATACTCCAGGAGATAAACAAGTTGCATAAAAAGCTTCAATCTG GAAGAGAAAAGAGTGGAATTAAGATGGCTGGAGEST: gi|71860950|gb|DT010005.1|DT010005
genomic: AGACGAGATACTCCAGGAGATAAACAAGTTGCATAAAAAGCTTCAATCTGgtgcgtctct ... gtttgtccagGAAGAGAAAAGAGTGGAATTAAGATGGCTGGAG
EST: AGACGAGATACTCCAGGAGATAAACAAGTTGCATAAAAAGCTTCAATCTG GAAGAGAAAAGAGTGGAATTAAGATGGCTGGAG
genomic: AGACGAGATACTCCAGGAGATAAACAAGTTGCATAAAAAGCTTCAATCTGgtgcgtctct ... gtttgtccagGAAGAGAAAAGAGTGGAATTAAGATGGCTGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCGGAATCCTCGAAACCTCGAAGGATCTGGATCGATTGAGGAGAGAGCAAGACGAGATACTCCAGGAGATAAACAAGTTGCATAAAAAGCTTCAATCTGgtgcgtctctgaaacccgatctctacctcgatgctccacctcttcatagaagttttgtggttgaatgtgctaaattttgcatattgtcacacataaattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccacc