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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAGACAGTAGTTTCGAAGATGACCAGCTCGCTTCTATGTCCACCGACGACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAGgtctctattctctctctttttctctttatatatgtgtctttccgtgatatgatttgcgattttgatgaatggtggtggtggtatggtgttgaag

Basic information

species Vitis vinifera
transcript Vv14s0060g02260.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0060g02260.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA10G29250.1 (Glycine max), 5'ss of exon 1
TGAAGACAGTAGTTTCGAAGATGACCAGCTCGCTTCTATGTCCACCGACGACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAGgtctctattctctctctttttctctttatatatgtgtctttccgtgatatgatt-----tgcgattttgatgaatggtggtggtggtatggtgttgaag---------------------------------------
||| |||   |  ||||||||||||||||||||   |||| ||||||||||| |||  || |||||||| |||||||| ||||| || || || ||||| ||      | | | | ||||  |||   | | |    ||  || | ||   ||        | || ||  |   || |   |      | |   | | |                                       
TGAGGACGCCAACTTCGAAGATGACCAGCTCGCCAATATGACCACCGACGACGTCGTCAGAGCTTCTCGTCTTCTCGACAACGAGATTCGCATCCTCAAAgtacaatctttttgttttttcttctgcttctgtaaccctaaccctaatcctatcgattacactatcttttttgctgcttccgtcttcttagccattagggtttctgatttttaattgaattgtttttggtggctgaag

upper sequence: Vv14s0060g02260.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA20G38030.1 (Glycine max), 5'ss of exon 1
TGAAGACAGTAGTTTCGAAGATGACCAGCTCGCTTCTATGTCCACCGACGACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAGgtct-ctattctctctctttttc-tctttatatatgtgtcttt--ccgtga---tatgatttgcg--attttgatgaatggtggtggtggtatggtgttgaag--------------------------------------
 || |||   |  |||||||||||||| || ||   |||| |||||||||||||||  || ||||| || |||||||| ||||| || || || |||||||| | || || ||| ||| |||| | ||| |   ||  ||| |  || | |   |||   || |   || ||  |   |  |   | |    | |   | | |                                      
AGAGGACGCGAACTTCGAAGATGACCAACTAGCCAATATGACCACCGACGACATCGTCAGAGCTTCACGTCTTCTCGACAACGAGATTCGCATCCTCAAGgtatactcttttctttctgtttcgtttttttccctgcttctgtaaccctaaccctatcgattacactatcttttttccttcttccgttttcttagccattagggtttctgattttaattgaattgtccttcgtgactgaag

upper sequence: Vv14s0060g02260.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT3G05530.1 (Arabidopsis thaliana), 5'ss of exon 1
TGAAGACAGTA-GTTTCGAAGATGACCAGCTCGCTTCTATGTCCACCGACGACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAGgt---ctctat-tctctctct-ttttctctttatatatgtgtctttccgtgat-atgatttgcgattttgatgaatggtggtggtggtatggtgttgaag
   | ||   | | |||||||| || ||||| ||||| ||||||||||| || ||| |||| ||| |||| |||||||| ||||| || ||||||||||||||   | |||| ||||||||  | | || |   | ||| |   | ||| ||||  |   ||   |  ||| |          | |   ||     | | |
-AGATACGTCAAGCTTCGAAGAGGATCAGCTTGCTTCCATGTCCACCGAAGATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAGgtttgccctatatctctctcgatctcctttgcctttatatcgttctccatgattgtatcttcttaaattggtttcatcaatcgctttaattccagtaagg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71864441|gb|DT013496.1|DT013496
EST:     ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAG                         GAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
genomic: ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAGgtctctattc ... ggtgttgaagGAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
EST: gi|71860997|gb|DT010052.1|DT010052
EST:     ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAG                         GAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
genomic: ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAGgtctctattc ... ggtgttgaagGAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
EST: gi|110724320|gb|EE100046.1|EE100046
EST:     ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAG                         GAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
genomic: ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAGgtctctattc ... ggtgttgaagGAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
EST: gi|71859210|gb|DT008265.1|DT008265
EST:     ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAG                         GAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
genomic: ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAGgtctctattc ... ggtgttgaagGAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
EST: gi|71858458|gb|DT007513.1|DT007513
EST:     ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAG                         GAGGAGTTGCAGAGGACGAACATGGAGTAGGACTCCTATAAGGAGAAGATC
genomic: ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAGgtctctattc ... ggtgttgaagGAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
EST: gi|71857850|gb|DT006905.1|DT006905
EST:     ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAG                         GAGGAGTTGCAGAGGACGAACATGGAGCGGGACTCCTATAAGGAGAAGATC
genomic: ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAGgtctctattc ... ggtgttgaagGAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
EST: gi|110685213|gb|EE063376.1|EE063376
EST:     ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAG                         GAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
genomic: ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAGgtctctattc ... ggtgttgaagGAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
EST: gi|294964455|gb|GW838258.1|GW838258
EST:     ACATTGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAG                         GAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
genomic: ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAGgtctctattc ... ggtgttgaagGAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
EST: gi|71859776|gb|DT008831.1|DT008831
EST:     ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAG                         GAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
genomic: ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAGgtctctattc ... ggtgttgaagGAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
EST: gi|71863186|gb|DT012241.1|DT012241
EST:     ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAG                         GAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
genomic: ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAGgtctctattc ... ggtgttgaagGAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
EST: gi|110724441|gb|EE100272.1|EE100272
EST:     ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAG                         GAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
genomic: ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAGgtctctattc ... ggtgttgaagGAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
EST: gi|110722856|gb|EE099502.1|EE099502
EST:     ACATTGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAG                         GAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
genomic: ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAGgtctctattc ... ggtgttgaagGAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
EST: gi|71861858|gb|DT010913.1|DT010913
EST:     ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAG                         GAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
genomic: ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAGgtctctattc ... ggtgttgaagGAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
EST: gi|110732813|gb|EE108430.1|EE108430
EST:     ACATTGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAG                         GAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
genomic: ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAGgtctctattc ... ggtgttgaagGAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
EST: gi|34549827|gb|CF518059.1|CF518059
EST:     ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAG                         GAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
genomic: ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAGgtctctattc ... ggtgttgaagGAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
EST: gi|34544589|gb|CF512821.1|CF512821
EST:     ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAG                         GAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
genomic: ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAGgtctctattc ... ggtgttgaagGAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
EST: gi|37184438|gb|CF603792.1|CF603792
EST:     ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAG                         GAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
genomic: ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAGgtctctattc ... ggtgttgaagGAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
EST: gi|71879123|gb|DT028178.1|DT028178
EST:     ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAG                         GAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
genomic: ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAGgtctctattc ... ggtgttgaagGAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC