1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AAGCAGTTCTCTTGTCTCGTTCTGCTTCGCTTTGTTCATTCTGACAGATTCTTCTTTGCAAGTCAAGCAACACCGCTGAATTTTCGTTTTTCAGAAGATGgtacgctatacccactgaattcagtttagggttagggtttggtgtacagtatctatttatatcttcatttatttgtgttttaacgattcagttgtttcgtttttcag
species | Vitis vinifera |
transcript | Vv14s0060g02240.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTTCTTTCCAAGTCAAGCAACACCGCTGAATTTTCGTTTTTCAGAAGATG CTTCCTCTTTCTCTGCTCAAGACTGCTCAAGGTCACCCTATGEST: gi|37189144|gb|CF608493.1|CF608493
genomic: CTTCTTTGCAAGTCAAGCAACACCGCTGAATTTTCGTTTTTCAGAAGATGgtacgctata ... cgtttttcagCTTCCTCTTTCTCTGCTCAAGACTGCTCAAGGTCACCCTATG
EST: CTTCTTTGCAAGTCAAGCGACACCGCTGAATTTTCGTTTTTCAGAAGATG CTTCCTCTTTCTCTGCTCAAGACTGCTCAAGGTCACCCTATGEST: gi|110368812|gb|EC932903.1|EC932903
genomic: CTTCTTTGCAAGTCAAGCAACACCGCTGAATTTTCGTTTTTCAGAAGATGgtacgctata ... cgtttttcagCTTCCTCTTTCTCTGCTCAAGACTGCTCAAGGTCACCCTATG
EST: GCAAGTCAAGCAACACCGCTGAATTTTCGTTTTTCAGAAGATG CTTCCTCTTTCTCTGCTCAAGACTGCTCAAGGTCACCCTATGEST: gi|71886236|gb|DT035291.1|DT035291
genomic: GCAAGTCAAGCAACACCGCTGAATTTTCGTTTTTCAGAAGATGgtacgctata ... cgtttttcagCTTCCTCTTTCTCTGCTCAAGACTGCTCAAGGTCACCCTATG
EST: CTTCTTTGCAAGTCAAGCAACACCGCTGAATTTTCGTTTTTCAGAAGATG CTTCCTCTTTCTCTGCTCAAGACTGCTCAAGGTCACCCTATGEST: gi|37184974|gb|CF604327.1|CF604327
genomic: CTTCTTTGCAAGTCAAGCAACACCGCTGAATTTTCGTTTTTCAGAAGATGgtacgctata ... cgtttttcagCTTCCTCTTTCTCTGCTCAAGACTGCTCAAGGTCACCCTATG
EST: CGTTTTTCAGAAGATG CTTCCTCTTTCTCTGCTCAAGACTGCTCAAGGTCACCCTATGEST: gi|37189131|gb|CF608480.1|CF608480
genomic: CGTTTTTCAGAAGATGgtacgctata ... cgtttttcagCTTCCTCTTTCTCTGCTCAAGACTGCTCAAGGTCACCCTATG
EST: CTTCTTTGCAAGTCAAGCGACACCGCTGAATTTTCGTTTTTCAGAAGATG CTTCCTCTTTCTCTGCTCAAGACTGCTCAAGGTCACCCTATG
genomic: CTTCTTTGCAAGTCAAGCAACACCGCTGAATTTTCGTTTTTCAGAAGATGgtacgctata ... cgtttttcagCTTCCTCTTTCTCTGCTCAAGACTGCTCAAGGTCACCCTATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGCAGTTCTCTTGTCTCGTTCTGCTTCGCTTTGTTCATTCTGACAGATTCTTCTTTGCAAGTCAAGCAACACCGCTGAATTTTCGTTTTTCAGAAGATGgtacgctatacccactgaattcagtttagggttagggtttggtgtacagtatctatttatatcttcatttatttgtgttttaacgattcagttgtttcgtttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG