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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCGGGGAAGAAACCCTAACCCTATCTTTCTCTCTCTAGCTCTCTTCTCTCTCCTCTCCATCGCTTCTGCGAAAGTCTTCTTTGAGGAGCGATTCGATGgtatgtactctccctagagccttttttttgcgttgaatttgggatgagtttagtgggatttgtgatcggtcggtgttttgtctgttttcgtttctcgatc...

Basic information

species Vitis vinifera
transcript Vv14s0060g01290.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110732858|gb|EE108510.1|EE108510
EST:     CATCGCTTCTGCGAAAGTCTTCTTTGAGGAGCGATTCCATG                         ATGGATGGGAGAATAAGTGGGTTAAATCCGAATGGAAGAAAGATGAGAACA
genomic: CATCGCTTCTGCGAAAGTCTTCTTTGAGGAGCGATTCGATGgtatgtactc ... atactttaagATGGATGGGAGAATAAGTGGGTTAAATCCGAATGGAAGAAAGATGAGAACA
EST: gi|110372400|gb|EC936562.1|EC936562
EST:     CATCGCTTCTGCGAAAGTCTTCTTTGAGGAGCGATTCGATG                         ATGGATGGGAGAATAAGTGGGTTAAATCCGAATGGAAGAAAGATGAGAACA
genomic: CATCGCTTCTGCGAAAGTCTTCTTTGAGGAGCGATTCGATGgtatgtactc ... atactttaagATGGATGGGAGAATAAGTGGGTTAAATCCGAATGGAAGAAAGATGAGAACA
EST: gi|110687770|gb|EE065562.1|EE065562
EST:     CATCGCTTCTGCGAAAGTCTTCTTTGAGGAGCGATTCGATG                         ATGGATGGGAGAATAAGTGGGTTAAATCCGAATGGAAGAAAGATGAGAACA
genomic: CATCGCTTCTGCGAAAGTCTTCTTTGAGGAGCGATTCGATGgtatgtactc ... atactttaagATGGATGGGAGAATAAGTGGGTTAAATCCGAATGGAAGAAAGATGAGAACA
EST: gi|110699525|gb|EE076601.1|EE076601
EST:     CATCGCTTCTGCGAAAGTCTTCTTTGAGGAGCGATTCCATG                         ATGGATGGGAGAATAAGTGGGTTAAATCCGAATGGAAGAAAGATGAGAACA
genomic: CATCGCTTCTGCGAAAGTCTTCTTTGAGGAGCGATTCGATGgtatgtactc ... atactttaagATGGATGGGAGAATAAGTGGGTTAAATCCGAATGGAAGAAAGATGAGAACA
EST: gi|110732288|gb|EE107443.1|EE107443
EST:     CATCGCTTCTGCGAAAGTCTTCTTTGAGGAGCGATTCCATG                         ATGGATGGGAGAATAAGTGGGTTAAATCCGAATGGAAGAAAGATGAGAACA
genomic: CATCGCTTCTGCGAAAGTCTTCTTTGAGGAGCGATTCGATGgtatgtactc ... atactttaagATGGATGGGAGAATAAGTGGGTTAAATCCGAATGGAAGAAAGATGAGAACA
EST: gi|110729565|gb|EE105649.1|EE105649
EST:     CATCGCTTCTGCGAAAGTCTTCTTTGAGGAGCGATTCCATG                         ATGGATGGGAGAATAAGTGGGTTAAATCCGAATGGAAGAAAGATGAGAACA
genomic: CATCGCTTCTGCGAAAGTCTTCTTTGAGGAGCGATTCGATGgtatgtactc ... atactttaagATGGATGGGAGAATAAGTGGGTTAAATCCGAATGGAAGAAAGATGAGAACA
EST: gi|110702773|gb|EE079035.1|EE079035
EST:     CATCGCTTCTGCGAAAGTCTTCTTTGAGGAGCGATTCCATG                         ATGGATGGGAGAATAAGTGGGTTAAATCCGAATGGAAGAAAGATGAGAACA
genomic: CATCGCTTCTGCGAAAGTCTTCTTTGAGGAGCGATTCGATGgtatgtactc ... atactttaagATGGATGGGAGAATAAGTGGGTTAAATCCGAATGGAAGAAAGATGAGAACA
EST: gi|110688081|gb|EE066225.1|EE066225
EST:     CATCGCTTCTGCGAAAGTCTTCTTTGAGGAGCGATTCGATG                         ATGGATGGGAGAATAAGTGGGTTAAATCCGAATGGAAGAAAGATGAGAACA
genomic: CATCGCTTCTGCGAAAGTCTTCTTTGAGGAGCGATTCGATGgtatgtactc ... atactttaagATGGATGGGAGAATAAGTGGGTTAAATCCGAATGGAAGAAAGATGAGAACA
EST: gi|110727891|gb|EE105170.1|EE105170
EST:     CATCGCTTCTGCGAAAGTCTTCTTTGAGGAGCGATTCCATG                         ATGGATGGGAGAATAAGTGGGTTAAATCCGAATGGAAGAAAGATGAGAACA
genomic: CATCGCTTCTGCGAAAGTCTTCTTTGAGGAGCGATTCGATGgtatgtactc ... atactttaagATGGATGGGAGAATAAGTGGGTTAAATCCGAATGGAAGAAAGATGAGAACA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTCGGGGAAGAAACCCTAACCCTATCTTTCTCTCTCTAGCTCTCTTCTCTCTCCTCTCCATCGCTTCTGCGAAAGTCTTCTTTGAGGAGCGATTCGATGgtatgtactctccctagagccttttttttgcgttgaatttgggatgagtttagtgggatttgtgatcggtcggtgttttgtctgttttcgtttctcgatc

- - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctccc