1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AATGGGTACAGCGATAGGTTGATTGAAGAAGAGGAGGAGGGTATTGACCATGAGGATGTTGCTGCTAAGTGTGCTGAGATTCAGAATGCCATCTCTGTTGgtgagctctctctctccccttctctctggtttgagatccctgaggttttgtggatgggttttggttgattttttatatgattgagattatgatgatgatg...
species | Vitis vinifera |
transcript | Vv14s0060g01280.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGAGGATGTTGCTGCTAAGTGTGCTGAGATTCAGAATGCCATCTCTGTTG GGGCAACCTCATTTCTGTTTACCGAGTATAGGTACCTTANCATCTTCATGGEST: gi|110405069|gb|EC970600.1|EC970600
genomic: TGAGGATGTTGCTGCTAAGTGTGCTGAGATTCAGAATGCCATCTCTGTTGgtgagctctc ... gtgtttccagGGGCAACCTCATTTCTGTTTACCGAGTATAGGTACCTTAGCATCTTCATGG
EST: TGAGGATGTTGCTGCTAAGTGTGCTGAGATTCAGAATGCCATCTCTGTTG GGGCAACCTCATTTCTGTTTACCGAGTATAGGTACCTTAGCATCTTCATGGEST: gi|30305231|gb|CB982025.1|CB982025
genomic: TGAGGATGTTGCTGCTAAGTGTGCTGAGATTCAGAATGCCATCTCTGTTGgtgagctctc ... gtgtttccagGGGCAACCTCATTTCTGTTTACCGAGTATAGGTACCTTAGCATCTTCATGG
EST: TGAGGATGTTGCTGCTAAGTGTGCTGAGATTCAGAATGCCATCTCTGTTG GGGCAACCTCATTTCTGTTTACCGAGTATAGGTACCTTAGCATCTTCATGGEST: gi|30304215|gb|CB981009.1|CB981009
genomic: TGAGGATGTTGCTGCTAAGTGTGCTGAGATTCAGAATGCCATCTCTGTTGgtgagctctc ... gtgtttccagGGGCAACCTCATTTCTGTTTACCGAGTATAGGTACCTTAGCATCTTCATGG
EST: TGAGGATGTTGCTGCTAAGTGTGCTGAGATTCAGAATGCCATCTCTGTTG GGGCAACCTCATTTCTGTTTACCGAGTATAGGTACCTTAGCATCTTCATGGEST: gi|110698962|gb|EE077060.1|EE077060
genomic: TGAGGATGTTGCTGCTAAGTGTGCTGAGATTCAGAATGCCATCTCTGTTGgtgagctctc ... gtgtttccagGGGCAACCTCATTTCTGTTTACCGAGTATAGGTACCTTAGCATCTTCATGG
EST: TGAGGATGTTGCTGCTAAGTGTGCTGAGATTCAGAATGCCATCTCTGTTG GGGCAACCTCATTTCTGTTTACCGAGTATAGGTACCTTAGCATCTTCATGGEST: gi|110698262|gb|EE075597.1|EE075597
genomic: TGAGGATGTTGCTGCTAAGTGTGCTGAGATTCAGAATGCCATCTCTGTTGgtgagctctc ... gtgtttccagGGGCAACCTCATTTCTGTTTACCGAGTATAGGTACCTTAGCATCTTCATGG
EST: TGAGGATGTTGCTGCTAAGTGTGCTGAGATTCAGAATGCCATCTCTGTTG GGGCAACCTCATTTCTGTTTACCGAGTATAGGTACCTTAGCATCTTCATGGEST: gi|30304144|gb|CB980938.1|CB980938
genomic: TGAGGATGTTGCTGCTAAGTGTGCTGAGATTCAGAATGCCATCTCTGTTGgtgagctctc ... gtgtttccagGGGCAACCTCATTTCTGTTTACCGAGTATAGGTACCTTAGCATCTTCATGG
EST: TGAGGATGTTGCTGCTAAGTGTGCTGAGATTCAGAATGCCATCTCTGTTG GGGCAACCTCATTTCTGTTTACCGAGTATAGGTACCTTAGCATCTTCATGGEST: gi|110712927|gb|EE088411.1|EE088411
genomic: TGAGGATGTTGCTGCTAAGTGTGCTGAGATTCAGAATGCCATCTCTGTTGgtgagctctc ... gtgtttccagGGGCAACCTCATTTCTGTTTACCGAGTATAGGTACCTTAGCATCTTCATGG
EST: TGAGGATGTTGCTGCTAAGTGTGCTGAGATTCAGAATGCCATCTCTGTTG GGGCAACCTCATTTCTGTTTACCGAGTATAGGTACCTTAGCATCTTCATGGEST: gi|352781563|gb|FQ468407.1|FQ468407
genomic: TGAGGATGTTGCTGCTAAGTGTGCTGAGATTCAGAATGCCATCTCTGTTGgtgagctctc ... gtgtttccagGGGCAACCTCATTTCTGTTTACCGAGTATAGGTACCTTAGCATCTTCATGG
EST: TGAGGATGTTGCTGCTAAGTGTGCTGAGATTCAGAATGCCATCTCTGTTG GGGCAACCTCATTTCTGTTTACCGAGTATAGGTACCTTAGCATCTTCATGG
genomic: TGAGGATGTTGCTGCTAAGTGTGCTGAGATTCAGAATGCCATCTCTGTTGgtgagctctc ... gtgtttccagGGGCAACCTCATTTCTGTTTACCGAGTATAGGTACCTTAGCATCTTCATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATGGGTACAGCGATAGGTTGATTGAAGAAGAGGAGGAGGGTATTGACCATGAGGATGTTGCTGCTAAGTGTGCTGAGATTCAGAATGCCATCTCTGTTGgtgagctctctctctccccttctctctggtttgagatccctgaggttttgtggatgggttttggttgattttttatatgattgagattatgatgatgatg
- - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctccc