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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTCGTCAGGGAGATCGAGCCGGTGAACCCGCCGGAGAACCAGACCCAGTTCGCCATGGCCTACTACGTCATCAACTACTCCAAACTCCGCATCTGGGAGgtgcgtctttagccatttcatcaaattttcaccctctgattcttacttgactttttctaattctgggttctttttttttgttttcag

Basic information

species Vitis vinifera
transcript Vv14s0060g00760.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0060g00760.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os03g20120.1 (Oryza sativa), 5'ss of exon 1
CGTCGTCAGGGAGATCGAGCCGGTGAACCCGCCGGAGAACCAGACCCAGTTCGCCATGGCCTACTACGTCATCAACTACTCCAAACTCCGCATCTGGGAGgtgcgtctttagccatttcatcaaattttcaccc---tctgattcttacttg---actttttc------taattctgggttctttttttttgttttcag---
| ||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||   |  |||  || |  | |   |  || |||     |||||    |  |    | |  ||      |  |   ||||| ||  |  | ||| |  |   
CATCGTCCGGGAGATCGAGCCGGTGTACCCGCCGGAGAACCAGACGCAGTTCGCCATGGCCTACTACGTCATCAACTACTCCAAGCTCCGCATCTGGGAGgtaattaattaatcaatg-agctcgtcatcgcccattcttgatttgcgccagcgagcgtgctcacgtgtttgtgtggggttattgatcctggttgtttgcag

upper sequence: Vv14s0060g00760.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM5G872256_T02 (Zea mays), 5'ss of exon 1
CGTCGTCAGGGAGATCGAGCCGGTGAACCCGCCGGAGAACCAGACCCAGTTCGCCATGGCCTACTACGTCATCAACTACTCCAAACTCCGCATCTGGGAGgtgcgtctttagc-catttcatcaaattttcaccctctgattctta--cttgactttttctaattctgggttctttttttttgttttcag-------------------
||||||| | ||||||||||| ||| ||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||   ||     | |       | ||     | |  || |||  |||  ||||| |  ||  | | |||| |     || |  |                     
CGTCGTCCGCGAGATCGAGCCCGTGTACCCGCCTGAGAACCAGACGCAGTTCGCCATGGCGTACTACGTCATCAACTACTCCAAGCTCCGCATCTGGGAGgtacgtacgtactgtgtgtgtgtgtgtgttttttgtttactttttagccttttcttttgcccataattg-ttctgtagcagtgctcacgtcacgtgtcgattcgtgcag

upper sequence: Vv14s0060g00760.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G165919_T01 (Zea mays), 5'ss of exon 1
CGTCGTCAGGGAGATCGAGCCGGTGAACCCGCCGGAGAACCAGACCCAGTTCGCCATGGCCTACTACGTCATCAACTACTCCAAACTCCGCATCTGGGAGgtg------cgtctttagccatttcatcaa--attttcaccctctgattcttacttgactttttctaattctgggttctttttttttgttt--tcag------------------
| || || | ||||||||||| ||| ||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||       |     |||  |  | |||       | ||  ||  ||  | | | |   |     ||| |||| | |  |  |  |       |||                   
CATCCTCCGCGAGATCGAGCCCGTGTACCCGCCTGAGAACCAGACGCAGTTCGCCATGGCGTACTACGTCATCAACTACTCCAAGCTCCGCATCTGGGAGgtaaccagccactgatagtgaactgatccgtggactgcatgcttcgac-catgcatctttgcccgtaactctgcggtgctactgctcaccacatcatgtcgccgttttcgtgcag

upper sequence: Vv14s0060g00760.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G361984_T01 (Zea mays), 5'ss of exon 1
---------------------------------CGTCGTCAGGGAGATCGAGCCGGTGAACCCGCCGGAGAACCAGACCCAGTTCGCCATGGCCTACTACGTCATCAACTACTCCAAACTCCGCATCTGGGAGgtgcgtctttagccatttcatcaaattttcaccctctgattcttacttgactttttctaattctgggttctttttttttgttttcag
                                 ||||||| | ||| || |||| ||| |||||||  ||| |||||| |||||||||||||||||||||||||||||||||||||| ||||| || |||||||||    |   | | | |  ||||||     |  |    |    ||  | |    |  |||  |   |  |  |             
GGAGCACCGCCGCAGTCTCCGCGACCAGGGCTGCGTCGTCCGCGAGGTCCAGCCCGTGTACCCGCCCCAGAGCCAGACGCAGTTCGCCATGGCCTACTACgtcatcaactactccaagctccggatatgggaggtgt---tggggacttgttctcaaat----gctatgaattaagaacaaggcaacataaaatgttaaatgatact-------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161714226|gb|FC064141.1|FC064141
EST:     TCGCCATGGCCTACTACGTCATCAACTACTCCAAACTCCGCATCTGGGAG                         TTTGTGGAGTACAGTAAGATGATATACTTGGACGGAGACATACAGGTGTTT
genomic: TCGCCATGGCCTACTACGTCATCAACTACTCCAAACTCCGCATCTGGGAGgtgcgtcttt ... ttgttttcagTTTGTGGAGTACAGTAAGATGATATACTTGGACGGAGACATACAGGTGTTT
EST: gi|161721789|gb|FC070152.1|FC070152
EST:     TCGCCATGGCCTACTACGTCATCAACTACTCCAAACTCCGCATCTGGGAG                         TTTGTGGAGTACAGTAAGATGATATACTTGGACGGAGACATACAGGTGTTT
genomic: TCGCCATGGCCTACTACGTCATCAACTACTCCAAACTCCGCATCTGGGAGgtgcgtcttt ... ttgttttcagTTTGTGGAGTACAGTAAGATGATATACTTGGACGGAGACATACAGGTGTTT
EST: gi|161719584|gb|FC067978.1|FC067978
EST:     TCGCCATGGCCTACTACGTCATCAACTACTCCAAACTCCGCATCTGGGAG                         TTTGTGGAGTACAGTAAGATGATATACTTGGACGGAGACATACAGGTGTTT
genomic: TCGCCATGGCCTACTACGTCATCAACTACTCCAAACTCCGCATCTGGGAGgtgcgtcttt ... ttgttttcagTTTGTGGAGTACAGTAAGATGATATACTTGGACGGAGACATACAGGTGTTT
EST: gi|161712553|gb|FC061858.1|FC061858
EST:     TCGCCATGGCCTACTACGTCATCAACTACTCCAAACTCCGCATCTGGGAG                         TTTGTGGAGTACAGTAAGATGATATACTTGGACGGAGACATACAGGTGTTT
genomic: TCGCCATGGCCTACTACGTCATCAACTACTCCAAACTCCGCATCTGGGAGgtgcgtcttt ... ttgttttcagTTTGTGGAGTACAGTAAGATGATATACTTGGACGGAGACATACAGGTGTTT
EST: gi|161714170|gb|FC062915.1|FC062915
EST:     TCGCCATGGCCTACTACGTCATCAACTACTCCAAACTCCGCATCTGGGAG                         TTTGTGGAGTACAGTAAGATGATATACTTGGACGGAGACATACAGGTGTTT
genomic: TCGCCATGGCCTACTACGTCATCAACTACTCCAAACTCCGCATCTGGGAGgtgcgtcttt ... ttgttttcagTTTGTGGAGTACAGTAAGATGATATACTTGGACGGAGACATACAGGTGTTT