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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAACTTCCTCGTCTTTGAAACAACCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAATGGATCGTTCATCAAACTGTTCCCTTGCTCGGGAACCAGgtaaatcatcttcagaaaaattttctactacatttttatttatataaacgttttgtaatgaaaagatctatgaaatagaatactggagtaaccattatgtttttatag

Basic information

species Vitis vinifera
transcript Vv14s0036g00790.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0036g00790.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA05G30830.1 (Glycine max), 5'ss of exon 13
TGGAACTTCCTCGTCTTTGAAACAACCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAATGGATCGTTCATCAAACTGTTCCCTTGCTCGGGAACCAGgtaaatcatcttcagaaaaattttctactacatttttatttatataaacgttttgt-aatg-aaaagatctatgaaatagaatactggagtaaccattatgtttttatag
                         |||||||||||||||||||||||||| |||||||| |||||  ||||||||| ||||||||  || ||||| ||||||| |  | |||    |   || ||  || ||||  ||   | ||  | | |||   ||| || | || ||||   |    | ||   |||                  
-------------------------CCTGCCCATGAGAAAATTGGAGTTGTTGATTCTCAGTGGATTATTCATCAAAGTGTTCCCTCACTAGGGAATCAGgtaatttgttttccatgattattactgttagatttaaatagttttactcatattgccgatgtaagatatgtatgtttttctttgcttttgtag-----------------

upper sequence: Vv14s0036g00790.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA08G14040.1 (Glycine max), 5'ss of exon 13
TGGAACTTCCTCGTCTTTGAAACAACCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAATGGATCGTTCATCAAACTGTTCCCTTGCTCGGGAACCAGgtaaatcatcttcagaaaaattttctactacatttttatttatataaacgttttgtaatgaaaagatctatgaaatagaatactggagtaaccattatgtttttatag
                         |||||||| ||||||||||||||||| |||||||| |||||  ||||||||| ||||||||  || ||||| ||||||| |  | |||    |   || ||  || |||           ||  |||||    | | |    | |||   ||  |||     ||     || || |||| |||
-------------------------CCTGCCCACGAGAAAATTGGAGTTGTTGATTCTCAGTGGATTATTCATCAAAGTGTTCCCTCACTAGGGAATCAGgtaatttgttttccatgattattactgttagattc----------aatagttttac--tcatatagccgatg---taagatatgtatgtttttctt-tgcttttgtag

upper sequence: Vv14s0036g00790.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA18G01710.1 (Glycine max), 5'ss of exon 13
TGGAACTTCCTCGTCTTTGAAACAACCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAATGGATCGTTCATCAAACTGTTCCCTTGCTCGGGAACCAGgtaaatcatct-tcagaaaaattttctact--acatttttatttatataaacgttttgtaatgaaaagatctatgaaatagaatactggagtaaccattatgtttttatag
                         |||||||||||||| ||||||||||| |||||||| ||||| ||||| |||  | ||||||  || ||||| ||||||  |  | | |||  |    | |  |||  ||||||||| | | | || |    ||||||  |    | | | | ||    |      | |                  
-------------------------CCTGCCCATGAGAAGATTGGAGTTGTTGATTCTCAGTGGATTGTTCACCAAGGTCTTCCCTCACTAGGGAATCAGgtactttgtttgtcatgatttctctagacttgacatttttactcaaa-aatctggctgtaatttatgcttat-taatattccttttctttgcag-----------------

upper sequence: Vv14s0036g00790.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA11G37770.1 (Glycine max), 5'ss of exon 13
TGGAACTTCCTCGTCTTTGAAACAACCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAATGGATCGTTCATCAAACTGTTCCCTTGCTCGGGAACCAGgtaaatcatcttcagaaaaattttctactacatttttatttat-ataaacgttttgtaatgaaaagatctatgaaatagaatactggagtaaccattatgtttttatag
                         ||||| |||||||| ||||||||||| |||||||| ||||| ||||| |||  | ||||||  || ||||| ||||||  |  | | |  |  | |     |||||  |    | ||  |  ||     | | |  |||| | ||||           ||| ||                    
-------------------------CCTGCACATGAGAAGATTGGAGTTGTTGATTCTCAGTGGATTGTTCACCAAGGTATTCCCTCACTAGGGAATCAGgtattttctttacc-atgagtccatgactactctagagtctaagactaaaacaatttcactaaaaaaactattctccttttctctgcag--------------------

upper sequence: Vv14s0036g00790.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA08G14050.1 (Glycine max), 5'ss of exon 11
TGGAACTTCCTCGTCTTTGAAACAACCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAATGGATCGTTCATCAAACTGTTCCCTTGCTCGGGAACCAGgtaaatcatcttcagaaaaattttctactacatttttatttatataaacgttttgtaatgaaaagatctatgaaatagaatactggagtaaccattatgtttttatag
                         |||||||||||||| ||||||||||| ||| |||| ||||| || || |||  | ||||||  || ||||| ||||||| |  | | |    |  ||| ||| ||  |||    ||| || |      |  ||||| ||  | |||  |||    || | |  |  |    |   ||    ||
-------------------------CCTGCCCATGAGAAGATTGGAGTTGTTGATACTCAGTGGATTGTGCACCAAGGTATTCCCTCACTAGGGAATCAGgtaattattttcccatgatttttcctattatgtttaatgtta-attatttcactcaaatgagaatgtatatataattct-tatttgttttcctgc-acacttg-gcag

upper sequence: Vv14s0036g00790.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA05G30850.1 (Glycine max), 5'ss of exon 11
TGGAACTTCCTCGTCTTTGAAACAACCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAATGGATCGTTCATCAAACTGTTCCCTTGCTCGGGAACCAGgtaaatcatcttc-agaaaaat--tttctactacatttttatttata-taaacgttttgt---aatgaaaagatctatgaaatagaatactggagtaaccattatgtttttatag---
                         |||||||||||||| ||||||||||| ||| |||| ||||| || || |||  | ||||||  || ||||| ||||||| |  | ||| |  |  ||  || ||| ||  |||   || ||  |||   |||      |||| ||   | | |  ||||      ||   |    ||  | | |   | |   
-------------------------CCTGCCCATGAGAAGATTGGAGTTGTTGATGCTCAGTGGATTGTGCACCAAGGTATTCCCTCACTAGGGAATCAGgtaattatttttctatgatcattgttcctattatgtttaatttaattctaattatttcactcaaatgcaactgtatgtataatacttatttgtttttgttatcctctgtgcttggtag

upper sequence: Vv14s0036g00790.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT3G26440.4 (Arabidopsis thaliana), 5'ss of exon 12
TGGAACTTCCTCGTCTTTGAAACAACCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAATGGATCGTTCATCAAACTGTTCCCTTGCTCGGGAACCAGgtaaatcatcttcagaaaaattttctactacattt--ttat-ttatataaacgttttgtaatgaaaagatctatgaaatagaatactggagtaaccattatgtttttatag
                         ||||| |||||||| ||||| ||||| ||||||||||||||| |||||||||   |||| |   | || | |||||| | | |       ||   | |  | ||| | |    ||  |||| ||   | ||  |  |  | || | ||    ||   ||  |     ||  |   || |       
-------------------------CCTGCACATGAGAAGATTGGTGTTGTGGATTCTCAATGGATCATTCATCAAAAGATTCCTTCTTTAGGCAGCCAGgttattaaatgatcaaactttatcttcctatactcaactacattatttactagcttctttgttcatagtttta-actatgagatgatctctcaaatacattgatcag----

upper sequence: Vv14s0036g00790.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT1G13000.2 (Arabidopsis thaliana), 5'ss of exon 12
TGGAACTTCCTCGTCTTTGAAACAACCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAATGGATCGTTCATCAAACTGTTCCCTTGCTCGGGAACCAGgtaaatcatcttcagaaaaattttctactacatttttatttatataaacgttttgtaatgaaaagatctatgaaatagaatactggagtaaccattatgtttttatag-
                         ||||| |||||||| || |||||||| ||||||||||||||| | |||||| || |||| |   | || | ||||||      |||| | || |  ||       || ||| |    || ||   || |||  ||   | || | |||   ||| |  | |        || | ||||||    
-------------------------CCTGCACATGAGAAGATAGGAGTTGTGGATTCTCAATGGATCATACATCAATCTCTTCCTTCTTTAGGCAGCCAGgt------tcttgacaataccttct-----caatttca---gtacaagtattctgttttgttcatatat-tgattcagattttttgg-------ttttctttttaccag

upper sequence: Vv14s0036g00790.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT1G67850.2 (Arabidopsis thaliana), 5'ss of exon 13
TGGAACTTCCTCGTCTTTGAAACAACCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAATGGATCGTTCATCAAACTGTTCCCTTGCTCGGGAACCAGgtaaatcatcttcagaaaaattttctactacatttttatttatataaacgttttgtaatgaaaagatctatgaaatagaatactggagtaaccattatgtttttatag
                         ||||| |||||||| || ||||| || |||||||||||| ||||||||||| || |||| |  || || ||||| |||||||   |     | || | ||| |||  |   | || |  |   |  |  | |||   |   | | |    |    ||                          
-------------------------CCTGCACATGAGAAGATAGGAGTAGTTGATTCTCAATGGGTCGTTCATCAATCTTTTCCTTCCCTTGGCAACCAAgtaaatcccat-----agaactctct-ctatgtccattttaacttcttctctcagaaatctgattctttttcgcttgatgtag-------------------------

upper sequence: Vv14s0036g00790.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: PP1S70_58V6.2 (Physcomitrella patens), 5'ss of exon 13
TGGAACTTCCTCGTCTTTGAAACAACCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAATGGATCGTTCATCAAACTGTTCCCTTGCTCGGGAACCAGgtaaatcatcttcagaaaaattttcta---ctacatttttatttatataaacgttttg-taatgaaaagatctatgaaatagaatactggagtaaccattatgtttttatag
                         ||||| ||||| |||||||||||||||||| |||| ||||||   ||||    ||| |  |  ||    | |  |||   |  || ||| ||  |||  ||    |||   || |    | ||    ||| |  |   |||| | | |  |  || |  ||  | |  || || |||          
-------------------------CCTGCACATGATAAAATTGGAGTTGTAGATGCTCAGTGGATCCGACATCGGGTTGTGCTATCTCTAAATAGCTCGgtttgtgttcctcacaaccattcactcgttctatgattcttccgagatcgcagttctaatgtcgaaatgctattcgttatggtttatagta--aagcaatat----------