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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGCTCTATAGTTTTTGGTTTTTGGATCTTGGGAAGTGCTTGGATTACAGAATCTTGGCTCGTTTTAGATTTCAGTAAAGCGGTTTGATTTTGgtacagggcttttcattttcttttgggttttaatttttttttcttttccccttttttattgtgtggaaaattttgttcggtttttttttttgttgaagatttgtggtttacgtatttgttttgtgtcaaatttgtcatttccatggaagttttcatggtgtctgctttttctgcag

Basic information

species Vitis vinifera
transcript Vv14s0036g00520.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|294965113|gb|GW836944.1|GW836944
EST:     ATTACAGAATCTTGGCTCGTTTTAGATTTCAGTAAAGCGGTTTGATTTTG                         AGAATAAGGGACAGAGGTTAAAGGGTTTTCTCTGAAATCAAGGGGAAAGAA
genomic: ATTACAGAATCTTGGCTCGTTTTAGATTTCAGTAAAGCGGTTTGATTTTGgtacagggct ... ttttctgcagAGAATAAGGGACAGAGGTTAAAGGGTTTTCTCTGAAATCAAGGGGAAAGAA
EST: gi|161709680|gb|FC058437.1|FC058437
EST:     ATTACAGAATCTTGGCTCGTTTTAGATTTCAGTAAAGCGGTTTGATTTTG                         AGAATAAGGGACAGAGGTTAAAGGGTTTTCTCTGAAATCAAGGGGAAAGAA
genomic: ATTACAGAATCTTGGCTCGTTTTAGATTTCAGTAAAGCGGTTTGATTTTGgtacagggct ... ttttctgcagAGAATAAGGGACAGAGGTTAAAGGGTTTTCTCTGAAATCAAGGGGAAAGAA
EST: gi|71861751|gb|DT010806.1|DT010806
EST:     ATTACAGAATCTTGGCTCGTTTTAGATTTCAGTAAAGCGGTTTGATTTTG                         AGAATAAGGGACAGAGGTTAAAGGGTTTTCTCTGAAATCAAGGGGAAAGAA
genomic: ATTACAGAATCTTGGCTCGTTTTAGATTTCAGTAAAGCGGTTTGATTTTGgtacagggct ... ttttctgcagAGAATAAGGGACAGAGGTTAAAGGGTTTTCTCTGAAATCAAGGGGAAAGAA
EST: gi|71862806|gb|DT011861.1|DT011861
EST:     ATTACAGAATCTTGGCTCGTTTTAGATTTCAGTAAAGCGGTTTGATTTTG                         TGAATAAGGGACAGAGGTTAAAGGGTTTTCTCTGAAATCAAAGGGAAAGAA
genomic: ATTACAGAATCTTGGCTCGTTTTAGATTTCAGTAAAGCGGTTTGATTTTGgtacagggct ... ttttctgcagAGAATAAGGGACAGAGGTTAAAGGGTTTTCTCTGAAATCAAGGGGAAAGAA
EST: gi|71863335|gb|DT012390.1|DT012390
EST:     ATTACAGAATCTTGGCTCGTTTTAGATTTCAGTAAAGCGGTTTGATTTTG                         AGAATAAGGGACAGAGGTTAAAGGGTTTTCTCTGAAATCAAGGGGAAAGAA
genomic: ATTACAGAATCTTGGCTCGTTTTAGATTTCAGTAAAGCGGTTTGATTTTGgtacagggct ... ttttctgcagAGAATAAGGGACAGAGGTTAAAGGGTTTTCTCTGAAATCAAGGGGAAAGAA
EST: gi|71863554|gb|DT012609.1|DT012609
EST:     ATTACAGAATCTTGGCTCGTTTTAGATTTCAGTAAAGCGGTTTGATTTTG                         AGAATAAGGGACAGAGGTTAAAGGGTTTTCTCTGAAATCAAGGGGAAAGAA
genomic: ATTACAGAATCTTGGCTCGTTTTAGATTTCAGTAAAGCGGTTTGATTTTGgtacagggct ... ttttctgcagAGAATAAGGGACAGAGGTTAAAGGGTTTTCTCTGAAATCAAGGGGAAAGAA
EST: gi|71860885|gb|DT009940.1|DT009940
EST:     ATTACAGAATCTTGGCTCGTTTTAGATTTCAGTAAAGCGGTTTGATTTTG                         AGAATAAGGGACAGAGGTTAAAGGGTTTTCTCTGAAATCAAGGGGAAAGAA
genomic: ATTACAGAATCTTGGCTCGTTTTAGATTTCAGTAAAGCGGTTTGATTTTGgtacagggct ... ttttctgcagAGAATAAGGGACAGAGGTTAAAGGGTTTTCTCTGAAATCAAGGGGAAAGAA
EST: gi|71864783|gb|DT013838.1|DT013838
EST:     ATTACAGAATCTTGGCTCGTTTTAGATTTCAGTAAAGCGGTTTGATTTTG                         TGAATAAGGGACAGAGGTTAAAGGGTTTTCTCTGAAATCAAAGGGAAAGAA
genomic: ATTACAGAATCTTGGCTCGTTTTAGATTTCAGTAAAGCGGTTTGATTTTGgtacagggct ... ttttctgcagAGAATAAGGGACAGAGGTTAAAGGGTTTTCTCTGAAATCAAGGGGAAAGAA
EST: gi|161718610|gb|FC068205.1|FC068205
EST:     ATTACAGAATCTTGGCTCGTTTTAGATTTCAGTAAAGCGGTTTGATTTTG                         AGAATAAGGGACAGAGGTTAAAGGGTTTTCTCTGAAATCAAGGGGAAAGAA
genomic: ATTACAGAATCTTGGCTCGTTTTAGATTTCAGTAAAGCGGTTTGATTTTGgtacagggct ... ttttctgcagAGAATAAGGGACAGAGGTTAAAGGGTTTTCTCTGAAATCAAGGGGAAAGAA
EST: gi|161714104|gb|FC064393.1|FC064393
EST:     ATTACAGAATCTTGGCTCGTTTTAGATTTCAGTAAAGCGGTTTGATTTTG                         AGAATAAGGGACAGAGGTTAAAGGGTTTTCTCTGAAATCAAGGGGAAAGAA
genomic: ATTACAGAATCTTGGCTCGTTTTAGATTTCAGTAAAGCGGTTTGATTTTGgtacagggct ... ttttctgcagAGAATAAGGGACAGAGGTTAAAGGGTTTTCTCTGAAATCAAGGGGAAAGAA