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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTCGACAGCCGACTCCAAGCAACAACAATGGCGGACAAGGCCGTTACCATCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTTgtgagtttccttttcttcctgtttggttccttggaaagcaaaagaaaatgaaggaaaatttttgttcctgtatttatcttagattcaatttactttgttc...

Basic information

species Vitis vinifera
transcript Vv14s0030g01620.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0030g01620.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA19G43190.1 (Glycine max), 5'ss of exon 1
CCTCGACAGCCGACT--CCAAGCAACAACAATGGCGGACAAGGCCGTTACCATCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTTgtgagtttccttttcttcctgtttggttccttggaaagcaaaagaaaatgaaggaaaatttttgttcctgtatttatcttagattcaattta--ctttgttc
     ||| |  |||  |  | |   ||  |||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||  | ||||||||||||||||||| ||||      |||  |||  |  ||| |   | | ||| |    |||| |   || | |  |   | || ||||   || |  ||||||| 
--GGCACACCTCACTCACTGAACGGTAAGTATGGCGGACAAGGCTGTTACAATCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttccctttcccttcctttt-ttcgctacaaatctgcacataattactcgaaatatcactttcggagtcc-tatttgattactttcaagctttgttt

upper sequence: Vv14s0030g01620.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA03G40530.1 (Glycine max), 5'ss of exon 1
CCTCGACAGCCGACTCCAAGCAACAACAATGGCGGACAAGGCCGTTACCATCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTTgtgagtttccttttcttcctgtttggttccttggaaagcaaaagaaaatgaaggaaaatttttgttcctgtatttatcttagattcaatttactttgttc------
    |    |  || |  | |   ||  |||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||  | ||||||||||||||||||| ||| |||        |  |        |  || ||  ||||  |  | |||        |||||   |    |||   ||  ||| ||       
TACAGCTCACACACACTGAACGGTAAGTATGGCGGACAAGGCTGTTACAATCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcccttttttctctacaaatctcc------acctaataacttgaaatatcactttcccagtcatatttgattatttttctgctttgttttttaattcgc

upper sequence: Vv14s0030g01620.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA20G37190.1 (Glycine max), 5'ss of exon 1
----CCTCGACAGCCGACTCCAAGCAACAACAATGGCGGACAAGGCCGTTACCATCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTTgtgagtttccttttcttcctgtttggttccttggaaagcaaaagaaaatgaaggaaaatttttgttcctgtatttatcttagattcaatttactttgttc--------
    |  | | ||||| | |  | |||||    ||||||||||||| || |||||||||||||||||||||||||| ||||||||||| ||  | ||||| || || |||||   ||  |    |  |  |     | |     |    | ||       | ||     |   || |  ||  |  |   |  |||||   |||        
GTTGCTCCTATAGCCGGCGCTCAACAACA----TGGCGGACAAGGCAGTCACCATCCGAACCAGAAAGTTCATGACAAACAGGCTTCTCTCCAGAAAGCAATTCgtaagtttttcttgttcttcgcattatgttacgcattttgattttatat-------agttccctctatcgtttcgattctgaaaaaatgttactc-attcgagaccca

upper sequence: Vv14s0030g01620.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA10G30200.1 (Glycine max), 5'ss of exon 1
----CCTCGACAGCCGACTCCAAGCAACAACAATGGCGGACAAGGCCGTTACCATCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTTgtgagtttccttttcttcctgtttggttccttggaaagcaaaagaaa-----atgaaggaaaatttttgttcctgtatttatcttagattcaat-ttactttgttc
    |  |   ||||| | | || |||||    ||||||||||||| || |||||||||||||| ||||| ||||| ||||||||||| ||  | |||||||| ||  ||||   |   ||| |  |  | || | |      |  |   |     ||   | | | ||     |   || |  ||  |  |  |||| | |||      
GTTGCTCCAGTAGCCGGCACTAAACAACA----TGGCGGACAAGGCAGTCACCATCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgtttttctcgtttcgtcctctgatcttcgctttatatcatgcattttgattttgtagagttccctctatcgtttcgattctgaaagcaatgtcact------

upper sequence: Vv14s0030g01620.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT3G04920.1 (Arabidopsis thaliana), 5'ss of exon 1
CCTCGACAGCCGACTCCAAGCAACAACAATGGCGGACAAGGCCGTTACCATCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTTgtgagtttcctt-ttcttcctgtttggttccttggaaagcaaaagaaaatgaaggaaaatttttgttcctgtatttatcttagattcaatttactttgttc--
 | |   |  |      ||| | ||| |||||| || ||||| || |||||||||||||| || |||||||||||||| ||||| ||  | |||||||| ||||||| | || || ||  | | |  |   |  | |    |       |          |||||||    |    |||| || |  |||||  | ||  |  
TCACTTTAATCCTTGAGAAGTAGCAAAAATGGCTGAAAAGGCGGTCACCATCCGAACCAGGAAATTCATGACCAACAGACTTCTCTCCAGGAAGCAGTTCgtgagttccattattttttttctcttctctatctgcatatcatttttgttcttctggg--ttttgttttaatgggaatct-agttataatttgatatgaaccc

upper sequence: Vv14s0030g01620.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT5G28060.1 (Arabidopsis thaliana), 5'ss of exon 1
CCTCGACAGCCGACTCCAAGCAACAACAATGGCGGACAAGGCCGTTACCATCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTTgtgagtttccttttct---tcctgtttggttccttggaaagcaaaagaaaatgaagga--aaatttttgttcctgtatttatcttagattcaatttactttgttc
    ||   | ||    ||    || | |||||||| || || || || ||| | |||||||| ||||||||||||||||||||  |  | ||||| || ||||||| || | |||   | |  ||| |     |   |     | |     |  | |   |||  |     || || ||    ||||  |||| |  |      
GACTGATCTCGGAAAGTAAATCGCAGCCATGGCGGAAAAAGCTGTCACTATCAGGACCAGAAACTTCATGACCAACAGGCTTCTCGCCAGAAAGCAATTCgtgagttcccatctctatgttccattttgcaatctcacagtgttacgtcttcgctgtatcgaatgataaaaactatagtttaggtagaaacaatcttata-----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34550927|gb|CF519135.1|CF519135
EST:     TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTT                         ATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
genomic: TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTTgtgagtttcc ... tgtcttgcagATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
EST: gi|110362912|gb|EC926471.1|EC926471
EST:     TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTT                         ATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
genomic: TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTTgtgagtttcc ... tgtcttgcagATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
EST: gi|30321070|gb|CD004332.1|CD004332
EST:     TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTT                         ATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
genomic: TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTTgtgagtttcc ... tgtcttgcagATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
EST: gi|71866240|gb|DT015295.1|DT015295
EST:     TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTT                         ATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
genomic: TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTTgtgagtttcc ... tgtcttgcagATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
EST: gi|71872113|gb|DT021168.1|DT021168
EST:     TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTT                         ATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
genomic: TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTTgtgagtttcc ... tgtcttgcagATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
EST: gi|18458660|gb|BM436938.1|BM436938
EST:     TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTT                         ATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTTTAAG
genomic: TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTTgtgagtttcc ... tgtcttgcagATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
EST: gi|30135948|gb|CB921286.1|CB921286
EST:     TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTT                         ATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
genomic: TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTTgtgagtttcc ... tgtcttgcagATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
EST: gi|37184145|gb|CF603499.1|CF603499
EST:     TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTT                         ATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
genomic: TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTTgtgagtttcc ... tgtcttgcagATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
EST: gi|351029237|gb|FQ435437.1|FQ435437
EST:     TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTT                         ATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
genomic: TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTTgtgagtttcc ... tgtcttgcagATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
EST: gi|71874519|gb|DT023574.1|DT023574
EST:     TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTT                         ATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
genomic: TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTTgtgagtttcc ... tgtcttgcagATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
EST: gi|110714825|gb|EE092178.1|EE092178
EST:     TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTT                         ATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
genomic: TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTTgtgagtttcc ... tgtcttgcagATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
EST: gi|110701352|gb|EE078828.1|EE078828
EST:     TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTT                         ATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
genomic: TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTTgtgagtttcc ... tgtcttgcagATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
EST: gi|110407407|gb|EC973007.1|EC973007
EST:     TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTT                         ATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
genomic: TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTTgtgagtttcc ... tgtcttgcagATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
EST: gi|37187949|gb|CF607300.1|CF607300
EST:     TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTT                         ATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
genomic: TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTTgtgagtttcc ... tgtcttgcagATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
EST: gi|352785814|gb|FQ475817.1|FQ475817
EST:     TCCGAACCAGAAAGTTCATGACCAACAGGCTTCCTTCTCGCAAGCAGTTT                         ATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
genomic: TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTTgtgagtttcc ... tgtcttgcagATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
EST: gi|46919451|gb|CN548780.1|CN548780
EST:     CTTTCTCGCAAGCAGTTT                         ATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
genomic: CTTTCTCGCAAGCAGTTTgtgagtttcc ... tgtcttgcagATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
EST: gi|110694122|gb|EE070954.1|EE070954
EST:     TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTT                         ATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
genomic: TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTTgtgagtttcc ... tgtcttgcagATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
EST: gi|351053839|gb|FQ441605.1|FQ441605
EST:     TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTT                         ATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
genomic: TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTTgtgagtttcc ... tgtcttgcagATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
EST: gi|32268605|gb|CD717764.1|CD717764
EST:     TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTT                         ATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
genomic: TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTTgtgagtttcc ... tgtcttgcagATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
EST: gi|110402749|gb|EC963356.1|EC963356
EST:     TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTT                         ATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
genomic: TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTTgtgagtttcc ... tgtcttgcagATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
EST: gi|32269613|gb|CD718772.1|CD718772
EST:     TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTT                         ATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
genomic: TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTTgtgagtttcc ... tgtcttgcagATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
EST: gi|110400221|gb|EC966773.1|EC966773
EST:     TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTT                         ATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
genomic: TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTTgtgagtttcc ... tgtcttgcagATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
EST: gi|110707923|gb|EE084876.1|EE084876
EST:     TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTT                         ATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
genomic: TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTTgtgagtttcc ... tgtcttgcagATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
EST: gi|34319409|gb|CF372163.1|CF372163
EST:     TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTT                         ATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
genomic: TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTTgtgagtttcc ... tgtcttgcagATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
EST: gi|351049488|gb|FQ429110.1|FQ429110
EST:     TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTT                         ATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
genomic: TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTTgtgagtttcc ... tgtcttgcagATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
EST: gi|110391519|gb|EC956500.1|EC956500
EST:     TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTT                         ATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
genomic: TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTTgtgagtttcc ... tgtcttgcagATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
EST: gi|34416045|gb|CF414799.1|CF414799
EST:     TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTT                         ATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
genomic: TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTTgtgagtttcc ... tgtcttgcagATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
EST: gi|77578503|gb|DV218045.1|DV218045
EST:     TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTT                         ATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
genomic: TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTTgtgagtttcc ... tgtcttgcagATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
EST: gi|22007443|gb|BQ792477.1|BQ792477
EST:     TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTT                         ATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTTTAAG
genomic: TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTTgtgagtttcc ... tgtcttgcagATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
EST: gi|110701262|gb|EE078640.1|EE078640
EST:     TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTT                         ATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
genomic: TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTTgtgagtttcc ... tgtcttgcagATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
EST: gi|161718020|gb|FC068553.1|FC068553
EST:     TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTT                         ATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
genomic: TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTTgtgagtttcc ... tgtcttgcagATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
EST: gi|30296070|gb|CB972864.1|CB972864
EST:     TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTT                         ATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
genomic: TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTTgtgagtttcc ... tgtcttgcagATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
EST: gi|110396446|gb|EC962132.1|EC962132
EST:     TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTT                         ATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
genomic: TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTTgtgagtttcc ... tgtcttgcagATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
EST: gi|87585035|gb|DY473961.1|DY473961
EST:     TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTT                         ATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
genomic: TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTTgtgagtttcc ... tgtcttgcagATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
EST: gi|349813139|gb|FQ411379.1|FQ411379
EST:     TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTT                         ATCATTGATGTTCTTCATCCAGGAAGACCTAATGTTTCTAAG
genomic: TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTTgtgagtttcc ... tgtcttgcagATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
EST: gi|71889488|gb|DT038543.1|DT038543
EST:     TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTT                         ATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
genomic: TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTTgtgagtttcc ... tgtcttgcagATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
EST: gi|351026260|gb|FQ428272.1|FQ428272
EST:     TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTT                         ATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG
genomic: TCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTTgtgagtttcc ... tgtcttgcagATCATTGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCTCGACAGCCGACTCCAAGCAACAACAATGGCGGACAAGGCCGTTACCATCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTTgtgagtttccttttcttcctgtttggttccttggaaagcaaaagaaaatgaaggaaaatttttgttcctgtatttatcttagattcaatttactttgttc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttggaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aggaaaa