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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTTTCTCTCTCTAGAATTCCTCAGATTCAATCAAgtagtaactctactttctctctctcttttttttttctctctctcatatctcactttctctctcggttaacttttttctgtatctttctgtgtcgattttgtttttgacttcag

Basic information

species Vitis vinifera
transcript Vv14s0030g01260.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71862308|gb|DT011363.1|DT011363
EST:     TTGTTTCTCTCTCTAGAATTCCTCAGATTCAATCAA                         GGGAGCCTTGCCCGCTCAGAATCTTGAAGCTA-G
genomic: TTGTTTCTCTCTCTAGAATTCCTCAGATTCAATCAAgtagtaactc ... ttgacttcagGGGAGCCTTGCCCGCTCAGAATCTTGAAGCTAGG
EST: gi|71862261|gb|DT011316.1|DT011316
EST:     TTGTTTCTCTCTCTAGAATTCCTCAGATTCAATCAA                         GGGAGCCTTGCCCGCTCAGAATCTTGGAGCTA-G
genomic: TTGTTTCTCTCTCTAGAATTCCTCAGATTCAATCAAgtagtaactc ... ttgacttcagGGGAGCCTTGCCCGCTCAGAATCTTGAAGCTAGG
EST: gi|71861054|gb|DT010109.1|DT010109
EST:     TTGTTTCTCTCTCTAGAATTCCTCAGATTCAATCAA                         GGGAGCCTTGCCCGCTCAGAATCTTGAAGCTA-G
genomic: TTGTTTCTCTCTCTAGAATTCCTCAGATTCAATCAAgtagtaactc ... ttgacttcagGGGAGCCTTGCCCGCTCAGAATCTTGAAGCTAGG
EST: gi|71864831|gb|DT013886.1|DT013886
EST:     TTGTTTCTCTCTCTAGAATTCCTCAGATTCAATCAA                         GGGAGCCTTGCCCGCTCAGAATCTTGAAGCTA-G
genomic: TTGTTTCTCTCTCTAGAATTCCTCAGATTCAATCAAgtagtaactc ... ttgacttcagGGGAGCCTTGCCCGCTCAGAATCTTGAAGCTAGG