1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CACAGCCGCCTCTCCATCGCCGGGAACTGCCGTATGTGTTTGGTCGAGGTAGAGAAGTCGCCTAAGCCCGTCGCTTCCTGCGCCATGCCCGCTCTTCCTGgttagggttttcagaaattttttatttgttcatttgtttggtagtttggcttttgtactgcgtggccttacactgtttcatcaattcgtgtttttttgtc...
species | Vitis vinifera |
transcript | Vv14s0006g02020.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGAGAAGTCGCCTAAGCCCGTCGCTTCCTGCGCCATGCCCGCTCTTCCTG GGATGAAGATTAAGACCAGTACEST: gi|110731198|gb|EE109146.1|EE109146
genomic: AGAGAAGTCGCCTAAGCCCGTCGCTTCCTGCGCCATGCCCGCTCTTCCTGgttagggttt ... ttttttttagGGATGAAGATTAAGACCAGTAC
EST: AGAGAAGTCGCCTAAGCCCGTCGCTTCCTGCGCCATGCCCGCTCTTCCTG GGATGAAGATTAAGACCAGTACACCAGTTGCAAAAAAGGCCAGAGAAGGAGEST: gi|352781338|gb|FQ467784.1|FQ467784
genomic: AGAGAAGTCGCCTAAGCCCGTCGCTTCCTGCGCCATGCCCGCTCTTCCTGgttagggttt ... ttttttttagGGATGAAGATTAAGACCAGTACACCAGTTGCAAAAAAGGCCAGAGAAGGAG
EST: AGAGAAGTCGCCTAAGCCCGTCGCTTCCTGCGCCATGCCCGCTCTTCCTG GGATGAAGATTAAGACCAGTACACCAGTTGCAAAAAAGGCCAGAGAAGGAGEST: gi|110732595|gb|EE108017.1|EE108017
genomic: AGAGAAGTCGCCTAAGCCCGTCGCTTCCTGCGCCATGCCCGCTCTTCCTGgttagggttt ... ttttttttagGGATGAAGATTAAGACCAGTACACCAGTTGCAAAAAAGGCCAGAGAAGGAG
EST: AGAGAAGTCGCCTAAGCCCGTCGCTTCCTGCGCCATGCCCGCTCTTCCTG GGATGAAGATTAAGACCAGTACACCAGTTGCAAAAAAGGCCAGAGAAGGAGEST: gi|161712112|gb|FC061484.1|FC061484
genomic: AGAGAAGTCGCCTAAGCCCGTCGCTTCCTGCGCCATGCCCGCTCTTCCTGgttagggttt ... ttttttttagGGATGAAGATTAAGACCAGTACACCAGTTGCAAAAAAGGCCAGAGAAGGAG
EST: AGATAAGTCGCCTAAGCCCGTCGCTTCCTGCGCCATGCCCGCTCTTCCTG GGATGAAGATTAAGACCAGTACACCAGTTGCAAAAAAGGCCAGAGAAGGAGEST: gi|71855139|gb|DT004194.1|DT004194
genomic: AGAGAAGTCGCCTAAGCCCGTCGCTTCCTGCGCCATGCCCGCTCTTCCTGgttagggttt ... ttttttttagGGATGAAGATTAAGACCAGTACACCAGTTGCAAAAAAGGCCAGAGAAGGAG
EST: AGAGAAGTCGCCTAAGCCCGTCGCTTCCTGCGCCATGCCCGCTCTTCCTG GGATGAAGATTAAGACCAGTACACCAGTTGCAAAAAAGGCCAGAGAAGGAGEST: gi|352769322|gb|FQ471471.1|FQ471471
genomic: AGAGAAGTCGCCTAAGCCCGTCGCTTCCTGCGCCATGCCCGCTCTTCCTGgttagggttt ... ttttttttagGGATGAAGATTAAGACCAGTACACCAGTTGCAAAAAAGGCCAGAGAAGGAG
EST: AGAGAAGTCGCCTAAGCCCGTCGCTTCCTGCGCCATGCCCGCTCTTCCTG GGATGAAGATTAAGACCAGTACACCAGTTGCAAAAAAGGCCAGAGAAGGAGEST: gi|110723230|gb|EE100308.1|EE100308
genomic: AGAGAAGTCGCCTAAGCCCGTCGCTTCCTGCGCCATGCCCGCTCTTCCTGgttagggttt ... ttttttttagGGATGAAGATTAAGACCAGTACACCAGTTGCAAAAAAGGCCAGAGAAGGAG
EST: AGAGAAGTCGCCTAAGCCCGTCGCTTCCTGCGCCATGCCCGCTCTTCCTG GGATGAAGATTAAGACCAGTACACCAGTTGCAAAAAAGGCCAGAGAAGGAGEST: gi|352765257|gb|FQ465954.1|FQ465954
genomic: AGAGAAGTCGCCTAAGCCCGTCGCTTCCTGCGCCATGCCCGCTCTTCCTGgttagggttt ... ttttttttagGGATGAAGATTAAGACCAGTACACCAGTTGCAAAAAAGGCCAGAGAAGGAG
EST: AGAGAAGTCGCCTAAGCCCGTCGCTTCCTGCGCCACGCCCGCTCTTCCTG GGATGAAGAATTAAGACCAGGACACCEST: gi|110688867|gb|EE067907.1|EE067907
genomic: AGAGAAGTCGCCTAAGCCCGTCGCTTCCTGCGCCATGCCCGCTCTTCCTGgttagggttt ... ttttttttagGGATGAAGA-TTAAGACCAGTACACC
EST: AGAGAAGTCGCCTAAGCCCGTCGCTTCCTGCGCCATGCCCGCTCTTCCTG GGATGAAGATTAAGACCAGTACACCAGTTGCAAAAAAGGCCAGAGAAGGAGEST: gi|352772818|gb|FQ473856.1|FQ473856
genomic: AGAGAAGTCGCCTAAGCCCGTCGCTTCCTGCGCCATGCCCGCTCTTCCTGgttagggttt ... ttttttttagGGATGAAGATTAAGACCAGTACACCAGTTGCAAAAAAGGCCAGAGAAGGAG
EST: AGAGAAGTCGCCTAAGCCCGTCGCTTCCTGCGCCATGCCCGCTCTTCCTG GGATGAAGATTAAGACCAGTACACCAGTTGCAAAAAAGGCCAGAGAAGGAGEST: gi|110699724|gb|EE076975.1|EE076975
genomic: AGAGAAGTCGCCTAAGCCCGTCGCTTCCTGCGCCATGCCCGCTCTTCCTGgttagggttt ... ttttttttagGGATGAAGATTAAGACCAGTACACCAGTTGCAAAAAAGGCCAGAGAAGGAG
EST: AGAGAAGTCGCCTAAGCCCGTTTTTTCCCGCGCCATGCCCGCTCTTCCTG GGATGAAGATTAAGACCAGTACACCAGTTGCAAAAAAGGCCAGAGAAGGAG
genomic: AGAGAAGTCGCCTAAGCCCGTCGCTTCCTGCGCCATGCCCGCTCTTCCTGgttagggttt ... ttttttttagGGATGAAGATTAAGACCAGTACACCAGTTGCAAAAAAGGCCAGAGAAGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACAGCCGCCTCTCCATCGCCGGGAACTGCCGTATGTGTTTGGTCGAGGTAGAGAAGTCGCCTAAGCCCGTCGCTTCCTGCGCCATGCCCGCTCTTCCTGgttagggttttcagaaattttttatttgttcatttgtttggtagtttggcttttgtactgcgtggccttacactgtttcatcaattcgtgtttttttgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcagaaa