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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTTGTTCGGAACGGCGTCGTCGGCGTACCAGGTGGAGGGAATGACCGATAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTGgtcagattctattctcactttgcattggatccttgcctttcttcttacttcttctatgtgtctctgatggatgagagtaaaaatggtggtacag

Basic information

species Vitis vinifera
transcript Vv14s0006g01790.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0006g01790.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os01g32364.1 (Oryza sativa), 5'ss of exon 1
TTCTTGTTCGGAACGGCGTCGTCGGCGTACCAGGTGGAGGGAATGACCGATAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTGgtcagattctattctcactttgcattggatccttgcctttcttcttacttcttctatgtgtctctgatggatgagagtaaaaatggtggtacag------
||| ||||||| |||||| |||||||||||||||||||||| ||| |    ||||  ||| | || ||  ||||||||||| | |  ||||| |  || ||| ||    |      ||  | ||||       |   ||| |    |     ||||| | |   |  | | | |   |    |   |   | |       
TTCGTGTTCGGGACGGCGGCGTCGGCGTACCAGGTGGAGGGCATGGCGCTCAAGGATGGCCGCGGCCCTAGCATTTGGGACGCCTTCGTCAAGACTCCCGgtgagcaaattaaggaaccgttcattttgatgctatttttatcaaaaaaaaatctatatttactttgttggtaaatttggttaatatatgagaaattctg

upper sequence: Vv14s0006g01790.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os12g23170.1 (Oryza sativa), 5'ss of exon 1
TTCTTGTTCGGAACGGCGTCGTCGGCGTACCAGGTGGAGGGAATGACCGATAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTGgtcagat------tctattctcactttgcattgg-atccttgcctttcttcttacttcttctatgtgtctctgatggatgagagtaaaaatggtggtacag
||| | ||||| || |||||||||||||||||||||||||| |   ||    ||   ||| ||||||| ||||| |||||| | |   | |    ||||||| ||||      |  ||  |||      | | | |   | |  | |     |||   |  ||      | ||  | ||      || |||||   ||   
TTCGTCTTCGGCACCGCGTCGTCGGCGTACCAGGTGGAGGGGAACGCCCTCCAGTATGGCCGAGGGCCCTGCATCTGGGACACCTTCCTGATGCAACCTGgtgagatcgatgatacatgttcaggcaaaactagcaatgtggtatctaaatatacagatcataaacagtt-tgtcgcatttttcaaataatggaattaaca

upper sequence: Vv14s0006g01790.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os07g46280.3 (Oryza sativa), 5'ss of exon 1
TTCTTGTTCGGAACGGCGTCGTCGGCGTACCAGGTGGAGGGAATGACCGATAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTGgtcagattctattctcactttgcattggatccttgcctttcttcttacttcttctatgtgtctc--tgatggatgagagtaaaaatggtggtacag
||| ||||||| |||||  |||||||||||||||||||||| ||| |  |  |||  ||| | || ||  |||| |||||| |||   |  | | ||| ||| | | |        | |  |  |   |  ||| |  | |   | |  |  |  |||   |||  || ||     | ||     ||     ||||
TTCGTGTTCGGCACGGCCGCGTCGGCGTACCAGGTGGAGGGCATGGCGAAGCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAGgtaaaagtaatcagagattcagagtactaaactt-cagtgcaggtgagatggtaaatggtgctcattgttgttaccgtgttcttgtgtcctgacag

upper sequence: Vv14s0006g01790.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G112704_T01 (Zea mays), 5'ss of exon 1
TTCTTGTTCGGAACGGCGTCGTCGGCGTACCAGGTGGAGGGAATGACCGATAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTGgtcagattc-tattctcactttgcattggatccttgcctttcttcttacttcttctatgtgtctctgatggatgagagtaaaaatggtggtacag
||| | ||||| ||||||||||||||||||||||||||||| |  ||  | | |   ||  | ||||| ||||| |||||| | |   ||||    || ||| |||  |   | |   | |  | || |    |||| |    | | ||      ||   |     ||| |||    ||  |             
TTCGTCTTCGGCACGGCGTCGTCGGCGTACCAGGTGGAGGGGAACACGCACAGGTACGGGCGCGGGCCCTGCATCTGGGACACCTTCCTCAAGTATCCAGgtgagacgcgcgtgcatgcatcacgttag----ttgcataatatttcaccatcgata-acgcgatagatcgatacttgtgcag------------

upper sequence: Vv14s0006g01790.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AC234160.1_FGT003 (Zea mays), 5'ss of exon 1
TTCTTGTTCGGAACGGCGTCGTCGGCGTACCAGGTGGAGGGAATGACCGATAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTGgtcag----------attctattctcactttgc--attggatccttgcctttcttcttacttcttctatgtgtctctgatggatgagagtaaaaatggtggtacag---------------------------------------------------------------------
||| ||||||| |||||| ||||||| |||||||||||||| ||| |  | ||||  ||| | |||||  ||||||||||| | |   |||| || || ||| ||          ||||  |   | |   ||  || ||| | || | ||| | || ||         ||    |   || ||| || |  | |||    | ||                                                                      
TTCGTGTTCGGGACGGCGGCGTCGGCCTACCAGGTGGAGGGCATGGCGCACAAGGACGGCCGCGGGCCGAGCATTTGGGACGCCTTCATCAAGATCCCCGgtgagcagcacactcattccgtcggcgcggcgctgatcggaccgtttcgtttatactgacgatgaaacagtagtacacttgtatg-gattgcatatgaaaatgcatcgatcgtggattgaattggcttgacatggttggatcatggcatggcaatggcggcgtcctgcttttcag

upper sequence: Vv14s0006g01790.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G118003_T01 (Zea mays), 5'ss of exon 1
TTCTTGTTCGGAACGGCGTCGTCGGCGTACCAGGTGGAGGGAATGACCGATAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTGgt-cagattctattc-tcactttgcattggatccttgcctttcttcttacttcttctatgtgtctctgatggatgagagtaaaaatggtggtacag----
||| ||||||| |||||| |||||||||||||||| |||||     |    |     ||| | || || | ||| |||||  | |  |   |  | || ||| | | |||  ||| ||||| ||       | |       ||| ||    |  |     || | | |  |     ||| |||  || ||    ||    
TTCGTGTTCGGGACGGCGACGTCGGCGTACCAGGTCGAGGGCGCCGCGTCCACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAGgtactgcttcgcttcgtcactgtgtccctcctacgctgaactctgctagactgcttcggctggcacgggagtggaggaggaaatctgatgcgtaagcgtg

upper sequence: Vv14s0006g01790.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA07G11310.1 (Glycine max), 5'ss of exon 1
TTCTTGTTCGGAACGGCGTCGTCGGCGTACCAGGTGGAGGGAATGACCGATAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTGgtcagattctattctcactttgcattggatccttgcctttcttcttacttcttctatgtgtctctgatggatgagagtaaaaatggtggtacag---------
||||| |||||||||||| |||| |||||||| |||||||| ||| || | || |  ||  | || ||| ||||||||||||  |   |||||| ||| |||  |     ||||||  ||  || |   |   |   ||  || ||| || || | |     |    |  ||   | ||   ||  |    |           
TTCTTATTCGGAACGGCGACGTCTGCGTACCAAGTGGAGGGTATGGCCCACAAAGACGGTCGCGGCCCAAGCATTTGGGACCTCTTCATCAAAAAACCCGgttcgtcaacattctctgtt--caattattttattttttaattattaatttttatgttcaatttcagtt-atttcattattgatcttaacgcgtgacgtcact

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351041108|gb|FQ444085.1|FQ444085
EST:     CAAAATACCTG                         GGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
genomic: CAAAATACCTGgtcagattct ... ggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
EST: gi|352781654|gb|FQ468952.1|FQ468952
EST:     TAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTG                         GGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
genomic: TAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTGgtcagattct ... ggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
EST: gi|352778017|gb|FQ467070.1|FQ467070
EST:     TAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTG                         GGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
genomic: TAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTGgtcagattct ... ggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
EST: gi|71870097|gb|DT019152.1|DT019152
EST:     TAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTG                         GGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
genomic: TAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTGgtcagattct ... ggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
EST: gi|349826342|gb|FQ417839.1|FQ417839
EST:     CAAAATACCTG                         GGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
genomic: CAAAATACCTGgtcagattct ... ggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
EST: gi|349826549|gb|FQ418640.1|FQ418640
EST:     CAAAATACCTG                         GGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
genomic: CAAAATACCTGgtcagattct ... ggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
EST: gi|351055499|gb|FQ442295.1|FQ442295
EST:     CAAAATACCTG                         GGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
genomic: CAAAATACCTGgtcagattct ... ggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
EST: gi|352777870|gb|FQ466923.1|FQ466923
EST:     TAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTG                         GGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
genomic: TAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTGgtcagattct ... ggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
EST: gi|352763933|gb|FQ465383.1|FQ465383
EST:     TAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTG                         GGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
genomic: TAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTGgtcagattct ... ggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
EST: gi|351047302|gb|FQ454913.1|FQ454913
EST:     CAAAATACCTG                         GGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
genomic: CAAAATACCTGgtcagattct ... ggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
EST: gi|351055347|gb|FQ441945.1|FQ441945
EST:     CAAAATACCTG                         GGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
genomic: CAAAATACCTGgtcagattct ... ggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
EST: gi|352769825|gb|FQ468753.1|FQ468753
EST:     TAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTG                         GGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
genomic: TAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTGgtcagattct ... ggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
EST: gi|351019898|gb|FQ439715.1|FQ439715
EST:     CAAAATACCTG                         GGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
genomic: CAAAATACCTGgtcagattct ... ggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
EST: gi|77587229|gb|DV222748.1|DV222748
EST:     TAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTG                         GGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
genomic: TAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTGgtcagattct ... ggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
EST: gi|161712389|gb|FC061694.1|FC061694
EST:     TAATGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTG                         GGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
genomic: TAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTGgtcagattct ... ggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
EST: gi|352777639|gb|FQ466692.1|FQ466692
EST:     TAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTG                         GGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
genomic: TAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTGgtcagattct ... ggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
EST: gi|352768049|gb|FQ467448.1|FQ467448
EST:     TAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTG                         GGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
genomic: TAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTGgtcagattct ... ggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
EST: gi|351056118|gb|FQ453580.1|FQ453580
EST:     CAAAATACCTG                         GGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
genomic: CAAAATACCTGgtcagattct ... ggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
EST: gi|352768397|gb|FQ469573.1|FQ469573
EST:     TAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTG                         GGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
genomic: TAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTGgtcagattct ... ggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
EST: gi|351016119|gb|FQ432074.1|FQ432074
EST:     CAAAATACCTG                         GGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
genomic: CAAAATACCTGgtcagattct ... ggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
EST: gi|351043324|gb|FQ451376.1|FQ451376
EST:     CAAAATACCTG                         GGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
genomic: CAAAATACCTGgtcagattct ... ggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
EST: gi|351016022|gb|FQ431977.1|FQ431977
EST:     CAAAATACCTG                         GGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
genomic: CAAAATACCTGgtcagattct ... ggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
EST: gi|71873314|gb|DT022369.1|DT022369
EST:     TAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTG                         GGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
genomic: TAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTGgtcagattct ... ggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
EST: gi|351032857|gb|FQ461746.1|FQ461746
EST:     CAAAATACCTG                         GGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
genomic: CAAAATACCTGgtcagattct ... ggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
EST: gi|110425826|gb|EC992219.1|EC992219
EST:     TAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTG                         GGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
genomic: TAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTGgtcagattct ... ggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
EST: gi|351044375|gb|FQ452927.1|FQ452927
EST:     CAAAATACCTG                         GGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
genomic: CAAAATACCTGgtcagattct ... ggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
EST: gi|352790248|gb|FQ481447.1|FQ481447
EST:     CAAAATACCTG                         GGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
genomic: CAAAATACCTGgtcagattct ... ggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
EST: gi|161718844|gb|FC066359.1|FC066359
EST:     TAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTG                         GGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
genomic: TAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTGgtcagattct ... ggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC