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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCTTCAACCATCCACCTTCCGTTTCCCATGGTCCTGGAACTGTGAAAGCATCCTGTTCGCCGTTTTCTTCTCCCTCGCTTCCTCTGTTGAGTCTGCAGAgtaagaaattttattgaaaatttctttgttcggtatgttactatgattgctgaaatttggaattctttaattggagctgaaatgaggatgaggtattcgt...

Basic information

species Vitis vinifera
transcript Vv14s0006g01410.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110713791|gb|EE090031.1|EE090031
EST:     ATCCTGTTCGCCGTTTTCTTCTCCCTCGCTTCCTCTGTTGAGTCTGCAGA                         GAAAAGCCATTCCAGGAGACAATGGGTCACCTGAAACCAAGGAAAACTCAC
genomic: ATCCTGTTCGCCGTTTTCTTCTCCCTCGCTTCCTCTGTTGAGTCTGCAGAgtaagaaatt ... tttgctctagGAAAAGCCATTCCAGGAGACAATGGGTCACCTGAAACCAAGGAAAACTCAC
EST: gi|71855726|gb|DT004781.1|DT004781
EST:     ATCCTCTTCGCCGTTTTCTTTTCCCTCGCTTCCTCGGTTGAGTCTGCAGA                         GAAAAGCCATTCCAGGTGGCAATGGGTCACCTGAAACCAAGGAAAACTCAC
genomic: ATCCTGTTCGCCGTTTTCTTCTCCCTCGCTTCCTCTGTTGAGTCTGCAGAgtaagaaatt ... tttgctctagGAAAAGCCATTCCAGGAGACAATGGGTCACCTGAAACCAAGGAAAACTCAC
EST: gi|27584260|gb|CB006955.1|CB006955
EST:     ATCCTGTTCGCCGTTTTCTTCTCCCTCGCTTCCTCTGTTGAGTCTGCAGA                         GAAAAGCCATTCCAGGAGACAATGGGTCACCTGAAACCAAGGAAAACTCAC
genomic: ATCCTGTTCGCCGTTTTCTTCTCCCTCGCTTCCTCTGTTGAGTCTGCAGAgtaagaaatt ... tttgctctagGAAAAGCCATTCCAGGAGACAATGGGTCACCTGAAACCAAGGAAAACTCAC
EST: gi|27586378|gb|CB009073.1|CB009073
EST:     ATCCTGTTCGCCGTTTTCTTCTCCCTCGCTTCCTCTGTTGAGTCTGCAGA                         GAAAAGCCATTCCAGGAGACAATGGGTCACCTGAAACCAAGGAAAACTCAC
genomic: ATCCTGTTCGCCGTTTTCTTCTCCCTCGCTTCCTCTGTTGAGTCTGCAGAgtaagaaatt ... tttgctctagGAAAAGCCATTCCAGGAGACAATGGGTCACCTGAAACCAAGGAAAACTCAC
EST: gi|161706859|gb|FC057634.1|FC057634
EST:     ATCCTCTTCGCCGTTTTCTTTTCCCTCGCTTCCTCGGTTGAGTCTGCAGA                         GAAAAGCCATTCCAGGTGACAATGGGTCACCTGAAACCAAGGAAAACTCAC
genomic: ATCCTGTTCGCCGTTTTCTTCTCCCTCGCTTCCTCTGTTGAGTCTGCAGAgtaagaaatt ... tttgctctagGAAAAGCCATTCCAGGAGACAATGGGTCACCTGAAACCAAGGAAAACTCAC
EST: gi|71855986|gb|DT005041.1|DT005041
EST:     TCCTCTTCGCCGTTTTCGTT-TCCCTCGCTTCCTCGGTTGAGTCTGCAGA                         GAAAAGCCATTCCAGGTGACAATGGGTCACCTGAAACCAAGGAAAACTCAC
genomic: TCCTGTTCGCCGTTTTC-TTCTCCCTCGCTTCCTCTGTTGAGTCTGCAGAgtaagaaatt ... tttgctctagGAAAAGCCATTCCAGGAGACAATGGGTCACCTGAAACCAAGGAAAACTCAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCCTTCAACCATCCACCTTCCGTTTCCCATGGTCCTGGAACTGTGAAAGCATCCTGTTCGCCGTTTTCTTCTCCCTCGCTTCCTCTGTTGAGTCTGCAGAgtaagaaattttattgaaaatttctttgttcggtatgttactatgattgctgaaatttggaattctttaattggagctgaaatgaggatgaggtattcgt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaatga