1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GCCTTCAACCATCCACCTTCCGTTTCCCATGGTCCTGGAACTGTGAAAGCATCCTGTTCGCCGTTTTCTTCTCCCTCGCTTCCTCTGTTGAGTCTGCAGAgtaagaaattttattgaaaatttctttgttcggtatgttactatgattgctgaaatttggaattctttaattggagctgaaatgaggatgaggtattcgt...
species | Vitis vinifera |
transcript | Vv14s0006g01410.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ATCCTGTTCGCCGTTTTCTTCTCCCTCGCTTCCTCTGTTGAGTCTGCAGA GAAAAGCCATTCCAGGAGACAATGGGTCACCTGAAACCAAGGAAAACTCACEST: gi|71855726|gb|DT004781.1|DT004781
genomic: ATCCTGTTCGCCGTTTTCTTCTCCCTCGCTTCCTCTGTTGAGTCTGCAGAgtaagaaatt ... tttgctctagGAAAAGCCATTCCAGGAGACAATGGGTCACCTGAAACCAAGGAAAACTCAC
EST: ATCCTCTTCGCCGTTTTCTTTTCCCTCGCTTCCTCGGTTGAGTCTGCAGA GAAAAGCCATTCCAGGTGGCAATGGGTCACCTGAAACCAAGGAAAACTCACEST: gi|27584260|gb|CB006955.1|CB006955
genomic: ATCCTGTTCGCCGTTTTCTTCTCCCTCGCTTCCTCTGTTGAGTCTGCAGAgtaagaaatt ... tttgctctagGAAAAGCCATTCCAGGAGACAATGGGTCACCTGAAACCAAGGAAAACTCAC
EST: ATCCTGTTCGCCGTTTTCTTCTCCCTCGCTTCCTCTGTTGAGTCTGCAGA GAAAAGCCATTCCAGGAGACAATGGGTCACCTGAAACCAAGGAAAACTCACEST: gi|27586378|gb|CB009073.1|CB009073
genomic: ATCCTGTTCGCCGTTTTCTTCTCCCTCGCTTCCTCTGTTGAGTCTGCAGAgtaagaaatt ... tttgctctagGAAAAGCCATTCCAGGAGACAATGGGTCACCTGAAACCAAGGAAAACTCAC
EST: ATCCTGTTCGCCGTTTTCTTCTCCCTCGCTTCCTCTGTTGAGTCTGCAGA GAAAAGCCATTCCAGGAGACAATGGGTCACCTGAAACCAAGGAAAACTCACEST: gi|161706859|gb|FC057634.1|FC057634
genomic: ATCCTGTTCGCCGTTTTCTTCTCCCTCGCTTCCTCTGTTGAGTCTGCAGAgtaagaaatt ... tttgctctagGAAAAGCCATTCCAGGAGACAATGGGTCACCTGAAACCAAGGAAAACTCAC
EST: ATCCTCTTCGCCGTTTTCTTTTCCCTCGCTTCCTCGGTTGAGTCTGCAGA GAAAAGCCATTCCAGGTGACAATGGGTCACCTGAAACCAAGGAAAACTCACEST: gi|71855986|gb|DT005041.1|DT005041
genomic: ATCCTGTTCGCCGTTTTCTTCTCCCTCGCTTCCTCTGTTGAGTCTGCAGAgtaagaaatt ... tttgctctagGAAAAGCCATTCCAGGAGACAATGGGTCACCTGAAACCAAGGAAAACTCAC
EST: TCCTCTTCGCCGTTTTCGTT-TCCCTCGCTTCCTCGGTTGAGTCTGCAGA GAAAAGCCATTCCAGGTGACAATGGGTCACCTGAAACCAAGGAAAACTCAC
genomic: TCCTGTTCGCCGTTTTC-TTCTCCCTCGCTTCCTCTGTTGAGTCTGCAGAgtaagaaatt ... tttgctctagGAAAAGCCATTCCAGGAGACAATGGGTCACCTGAAACCAAGGAAAACTCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCTTCAACCATCCACCTTCCGTTTCCCATGGTCCTGGAACTGTGAAAGCATCCTGTTCGCCGTTTTCTTCTCCCTCGCTTCCTCTGTTGAGTCTGCAGAgtaagaaattttattgaaaatttctttgttcggtatgttactatgattgctgaaatttggaattctttaattggagctgaaatgaggatgaggtattcgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaatga