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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGGAGTCTCGTAAGCTGCTATGCGTTGGCCCCCGCCAGATGTATGTCCCTCAATTTGGCCGTCAAGTACGCCGATGTTATTCATTCTGTCATCTTGCAGgttcattctttcatttatttgttaaggtgttttttcatcccattccatttccttccacatcaatccatcaatcaatcaattatctgagcctgcccttttctacatggatctgatccag

Basic information

species Vitis vinifera
transcript Vv14s0006g01030.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0006g01030.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA11G33660.1 (Glycine max), 5'ss of exon 1
CAGGAGTCTCGTAAGCTGCTATGCGTTGGCCCCCGCCAGATGTATGTCCCTCAATTTGGCCGTCAAGTACGCCGATGTTATTCATTCTGTCATCTTGCAGgttcattctttcatttatttgt-taaggtgttttttcatcccattccatttccttccacatcaatccatcaatcaatcaattatctgagcctgcccttttctacatggatctgatccag
|| |       |  | ||||||||| | || || || || ||||||||||||||||||||||||||||| ||| || | ||||||||| |  | |||||||||      | ||| ||  |   | |    |   | | ||   ||     | |||        ||   | | |    ||| | |   ||    |    |   | |              
CAAGGAGAAGATTCGTTGCTATGCGCTTGCTCCAGCTAGGTGTATGTCCCTCAATTTGGCCGTCAAGTATGCCAATTTCATTCATTCTATTGTTTTGCAGgttacaatctacatctacataccttacacatcaatgcttctttttttcactactttggttgttattttttattg---caaatgtt--agttaacaaactcaaaaa--------------

upper sequence: Vv14s0006g01030.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA18G04540.1 (Glycine max), 5'ss of exon 1
CAGGAGTCTCGTAAGCTGCTATGCGTTGGCCCCCGCCAGATGTATGTCCCTCAATTTGGCCGTCAAGTACGCCGATGTTATTCATTCTGTCATCTTGCAGgttcattctttcatttatttgttaaggtgttttttcatcccattccatttccttccacatcaatccatcaatcaatcaattatctgagcctgcccttttctacatggatctgatccag
 | |       |  | ||||||||| | || || || || ||||||||||| |||||||| |||||||| ||| |||| ||||||||| |  | |||||||||      | ||| |||       | |  |||||  | |  |  || | |   |||||  | ||  | |  |  ||  |  |      |  ||  | |||   || |||| ||    
-AAGGAGAAGATTCGGTGCTATGCGCTTGCTCCAGCTAGGTGTATGTCCCTGAATTTGGCTGTCAAGTATGCCAATGTCATTCATTCTATTGTTTTGCAGGttacaatctacatctat-------gcttctttttttttctttagcaatgcgggccacacta-tctgtgacacgttctgtcttt-----ccaccactatctctctg-atctcatg---