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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGGCAGTGCTAGGGGGTATCAGTCTTTAAGgtatgcttgcatttctctcgtctctgctttcatcctttggattcgcccttgtagattttgtttttcctgttcttttcttagatgtgtcttcttcattttt...

Basic information

species Vitis vinifera
transcript Vv14s0006g00820.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26256908|gb|CA807971.1|CA807971
EST:     AGGCAGTGCTNAGGGGGTATCAGTCTTTAAG                         GTAAGCCATGGTTAAGCATAACAATGTTGTGCCTAATGGGCACTTCAAGAA
genomic: AGGCAGTGCT-AGGGGGTATCAGTCTTTAAGgtatgcttgc ... ccatttacagGTAAGCCATGGTTAAGCATAACAATGTTGTGCCTAATGGGCACTTCAAGAA
EST: gi|29781900|gb|CB346727.2|CB346727
EST:     GGCAGTGCTAGGGGGTATCAGTCTTTAAG                         GTAAGCCATGGTTAAGCATAACAATGTTGTGCCTAATGGGCACTTCAAGAA
genomic: GGCAGTGCTAGGGGGTATCAGTCTTTAAGgtatgcttgc ... ccatttacagGTAAGCCATGGTTAAGCATAACAATGTTGTGCCTAATGGGCACTTCAAGAA
EST: gi|30303531|gb|CB980325.1|CB980325
EST:     GCAGTGCTAGGGGGTATCAGTCTTTAAG                         GTAAGCCATGGTTAAGCATAACAATGTTGTGCCTAATGGGCACTTCAAGAA
genomic: GCAGTGCTAGGGGGTATCAGTCTTTAAGgtatgcttgc ... ccatttacagGTAAGCCATGGTTAAGCATAACAATGTTGTGCCTAATGGGCACTTCAAGAA
EST: gi|26256977|gb|CA808040.1|CA808040
EST:     AGGCAGTGCTAGGGGGTATCAGTCTTTAAG                         GTAAGCCATGGTTAAGCATAACAATGTTGTGCCTAATGGGCACTTCAAGAA
genomic: AGGCAGTGCTAGGGGGTATCAGTCTTTAAGgtatgcttgc ... ccatttacagGTAAGCCATGGTTAAGCATAACAATGTTGTGCCTAATGGGCACTTCAAGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGAGGCAGTGCTAGGGGGTATCAGTCTTTAAGgtatgcttgcatttctctcgtctctgctttcatcctttggattcgcccttgtagattttgtttttcctgttcttttcttagatgtgtcttcttcattttt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttctctc