Sequence
atgc intronic sequence ATGC exonic sequenceTTGAAGAAGGGACCATGGACGGCTGAAGAGGACAAGAAGCTCATCAACTTCATTCTCACCAATGGCCAATGCTGTTGGAGAGCTGTTCCTAAACTTGCAGgtctcccacattattcttatttctcttttgctaccagcttttgtctctgcaacatggaaatacgatttctaaagctgcttttcctcctgatttttttggg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0006g00450.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os08g33150.1 (Oryza sativa), 5'ss of exon 1
TTGAAGAAGGGACCATGGACGGCTGAAGAGGACAAGAAGCTCATCAACTTCATTCTCACCAATGGCCAATGCTGTTGGAGAGCTGTTCCTAAACTTGCAGgtctccca--cattattcttatttctcttttgctaccagcttttgtctctgcaacatggaaa-tacgatt----tctaaagctgcttttcctcctgatttttttggg---------------------------
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CTGAAGAAGGGGCCATGGACGGCGGAGGAGGACCAGAAGCTCATCACCTTCCTCCTCACCAACGGCCAGTGCTGCTGGCGCGCCGTCCCCAAGCTCGCCGgtgcgtcgatcgagatcctcgtgtcgcagtactactttatgtgtgttttggctatgtgcatcctacgatcgaggccgaaagtttatatactttc--attgtctgaaaaagggtatgtttgtaataaaattatag
upper sequence: Vv14s0006g00450.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os02g49986.1 (Oryza sativa), 5'ss of exon 1
TTGAAGAAGGGACCATGGACGGCTGAAGAGGACAAGAAGCTCATCAACTTCATTCTCACCAATGGCCAATGCTGTTGGAGAGCTGTTCCTAAACTTGCAGgtct-----cccacattattcttatttctcttttgctacc-----------agcttttgtctctgca---acatggaaatacgatttcta---aagctgcttttcctcctgattttt-ttggg------------
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CTGAAGAAGGGGCCATGGACGGCCGACGAGGACCAGAAGCTGGTCACCTTCCTCCTCTCCAATGGCCACTGCTGCTGGAGGCTCGTCCCCAAGCTCGCAGgtgcatgagcatgcatgaccatgtgtttccatctgatgcgcgaaagggaaaaggattcgcgttaacatgcagatcgtcctgcaactgcaatgggagtgactgtgccttcgggtttttgctatgtttcactcgcag
upper sequence: Vv14s0006g00450.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os09g23620.1 (Oryza sativa), 5'ss of exon 1
TTGAAGAAGGGACCATGGACGGCTGAAGAGGACAAGAAGCTCATCAACTTCATTCTCACCAATGGCCAATGCTGTTGGAGAGCTGTTCCTAAACTTGCAGgtctcccacattattcttatttctcttttgctaccagcttttgtctctgcaacatggaaatacgatttctaaagctgcttttcctcctgatttttttggg---
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CTGAAGAAGGGTCCATGGACGGCGGAGGAGGACCAGAAGCTCGTCAGCTTCCTCCTCGGCAACGGCCAATGCTGCTGGCGTGCCGTCCCCAAGCTCGCCGgtgagtcac-------ccacctcgccagagtt-tcagtctctctcttt--aatttggtcgatccattgatcaatggactgatgtatctgtgtaactgaaacag
upper sequence: Vv14s0006g00450.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA14G39530.1 (Glycine max), 5'ss of exon 1
TTGAAGAAGGGACCATGGACGGCTGAAGAGGACAAGAAGCTCATCAACTTCATTCTCACCAATGGCCAATGCTGTTGGAGAGCTGTTCCTAAACTTGCAGgtctcccacatt--attcttatttctcttttgctaccagcttttgtctctgcaacatggaaatacgatttctaaagctgcttttcctcctgatttttttggg
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TTGAAGAAGGGGCCATGGACTGCAGAGGAGGATAAGAAGCTCATAAGCTTCATCCTCACTAATGGCCAATGTTGCTGGAGAGCTGTTCCTAAGCTAGCAGgtctcctcaatttagtccttaatttgtagccatccaaatcatttatgaataatgaatgaagctgaaatgcatcagtttttcatgctttctttgttatttg--
upper sequence: Vv14s0006g00450.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA11G33620.1 (Glycine max), 5'ss of exon 1
TTGAAGAAGGGACCATGGACGGCTGAAGAGGACAAGAAGCTCATCAACTTCATTCTCACCAATGGCCAATGCTGTTGGAGAGCTGTTCCTAAACTTGCAGgtctcccacattattcttatttctcttttgctaccagcttttgtctctgcaaca-tggaaatacgatttctaaagctgcttttcctcctgatttttttggg---
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TTGAAGAAGGGGCCATGGACCGCAGAGGAGGATAAGAAACTCATCAATTTCATCCTCACTAATGGCCAATGTTGCTGGAGAGCTGTCCCTAAACTAGCAGgtctcc----tttcattgcttcttctcttggtgcatgtctttaactctaaggctctattattatggtccttgttattgaagccactcatttccttaatgggact
upper sequence: Vv14s0006g00450.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA02G41180.1 (Glycine max), 5'ss of exon 1
TTGAAGAAGGGACCATGGACGGCTGAAGAGGACAAGAAGCTCATCAACTTCATTCTCACCAATGGCCAATGCTGTTGGAGAGCTGTTCCTAAACTTGCAGgtctcccacattattcttatttctcttttgctac-cagcttttgtctctgcaacatggaaatacgatttctaaagctgcttttcctcctgatttttttggg
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TTGAAGAAGGGGCCATGGACTGCAGAGGAGGATAAGAAGCTCATAAGCTTCATCCTCACTAATGGCCAATGTTGCTGGAGAGCTGTCCCTAAGCTAGCAGgtctcctcaatt-taatccttaatttctagccattcaaatcatttatgaataatgaaatgccacagtttttcatgcttcatttgctatttggttatgaata
upper sequence: Vv14s0006g00450.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT5G16600.1 (Arabidopsis thaliana), 5'ss of exon 1
TTGAAGAAGGGACCATGGACGGCTGAAGAGGACAAGAAGCTCATCAACTTCATTCTCACCAATGGCCAATGCTGTTGGAGAGCTGTTCCTAAACTTGCAGgtctcccacattattcttatttctcttttgctacca-gcttttgtctctg-caacatggaaatacgatttctaaagctgcttttc-ctcctgatttttttggg--
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TTAAAGAAAGGGCCATGGACTATTGAAGAAGACAAGAAGCTCATCAACTTCATCCTCACCAATGGCCATTGCTGTTGGAGAGCTCTTCCCAAGCTTTCTGgttt-----attatctctctttctcttaacttaacaagacaccgtttgtgatggctcatgtttagaaatttcagttttgcttcacactttttctttaccttaaatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71856377|gb|DT005432.1|DT005432EST: CATTCTCACCAATGGCCAATGCTGTTGGAGAGCTGTTCCTAAGCTTGCAG GCCTGTTAAGGTGTGGGAAGAGTTGCAGGCTAAGATGGACAAACTATCTGA
genomic: CATTCTCACCAATGGCCAATGCTGTTGGAGAGCTGTTCCTAAACTTGCAGgtctcccaca ... atcattgcagGACTGTTAAGGTGTGGGAAGAGTTGCAGGCTAAGATGGACAAACTATCTGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTGAAGAAGGGACCATGGACGGCTGAAGAGGACAAGAAGCTCATCAACTTCATTCTCACCAATGGCCAATGCTGTTGGAGAGCTGTTCCTAAACTTGCAGgtctcccacattattcttatttctcttttgctaccagcttttgtctctgcaacatggaaatacgatttctaaagctgcttttcctcctgatttttttggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcctcc