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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGGTTTTCTTGATACCCCCATCATCTGCCGGTGGTCGGAAGCTGGAGATAAAGAAGCACTTGAAGCGTCTGAACAAGCGTGCTGTTAAAACCATTAAGgttcgcttctttttccctttctttcactttttctcctttttcccctttttcccttttcctctaataatgattcttatatatcctaagccagctcgtgtta...

Basic information

species Vitis vinifera
transcript Vv13s0320g00060.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351021644|gb|FQ430531.1|FQ430531
EST:     TAAAGAAGCACTTGAAGCGTCTGAACAAGCGTGCTGTTAAAACCATTAAG                         AGCCGAGATGGAGATATAATCGACTGTGTCCGAGTAACCCACCAACCAGCT
genomic: TAAAGAAGCACTTGAAGCGTCTGAACAAGCGTGCTGTTAAAACCATTAAGgttcgcttct ... ctaaaaacagAGCCGAGATGGAGATATAATCGACTGTGTCCGAGTAACCCACCAACCAGCT
EST: gi|352786476|gb|FQ479085.1|FQ479085
EST:     TAAAGAAGCACTTGAAGCGTCTGAACAAGCGTGCTGTTAAAACCATTAAG                         AGCCGAGATGGAGATATAATCGACTGTGTCCGAGTAACCCACCAACCAGCT
genomic: TAAAGAAGCACTTGAAGCGTCTGAACAAGCGTGCTGTTAAAACCATTAAGgttcgcttct ... ctaaaaacagAGCCGAGATGGAGATATAATCGACTGTGTCCGAGTAACCCACCAACCAGCT
EST: gi|77577965|gb|DV217741.1|DV217741
EST:     TAAAGAAGCACTTGAAGCGTCTGAACAAGCGTGCTGTTAAAACCATTAAG                         AGCCGAGATGGAGATATAATCGACTGTGTCCGAGTAACCCACCAACCAGCT
genomic: TAAAGAAGCACTTGAAGCGTCTGAACAAGCGTGCTGTTAAAACCATTAAGgttcgcttct ... ctaaaaacagAGCCGAGATGGAGATATAATCGACTGTGTCCGAGTAACCCACCAACCAGCT
EST: gi|349825565|gb|FQ419482.1|FQ419482
EST:     TAAAGAAGCACTTGAAGCGTCTGAACAAGCGTGCTGTTAAAACCATTAAG                         AGCCGAGATGGAGATATAATCGACTGTGTCCGAGTAACCCACCAACCAGCT
genomic: TAAAGAAGCACTTGAAGCGTCTGAACAAGCGTGCTGTTAAAACCATTAAGgttcgcttct ... ctaaaaacagAGCCGAGATGGAGATATAATCGACTGTGTCCGAGTAACCCACCAACCAGCT
EST: gi|351027498|gb|FQ446661.1|FQ446661
EST:     TAAAGAAGCACTTGAAGCGTCTGAACAAGCGTGCTGTTAAAACCATTAAG                         AGCCGAGATGGAGATATAATCGACTGTGTCCGAGTAACCCACCAACCAGCT
genomic: TAAAGAAGCACTTGAAGCGTCTGAACAAGCGTGCTGTTAAAACCATTAAGgttcgcttct ... ctaaaaacagAGCCGAGATGGAGATATAATCGACTGTGTCCGAGTAACCCACCAACCAGCT
EST: gi|110357269|gb|EC920691.1|EC920691
EST:     TAAAGAAGCACTTGAAGCGTCTGAACAAGCGTGCTGTTAAAACCATTAAG                         AGCCGAGATGGAGATATAATCGACTGTGTCCGAGTAACCCACCAACCAGCT
genomic: TAAAGAAGCACTTGAAGCGTCTGAACAAGCGTGCTGTTAAAACCATTAAGgttcgcttct ... ctaaaaacagAGCCGAGATGGAGATATAATCGACTGTGTCCGAGTAACCCACCAACCAGCT
EST: gi|351031821|gb|FQ460078.1|FQ460078
EST:     TAAAGAAGCACTTGAAGCGTCTGAACAGGCGTGCTGTTAAAACCATTAAG                         AGCCGAGATGGAGATATAATCGACTGTGTCCGAGTAACCCACCAACCAGCT
genomic: TAAAGAAGCACTTGAAGCGTCTGAACAAGCGTGCTGTTAAAACCATTAAGgttcgcttct ... ctaaaaacagAGCCGAGATGGAGATATAATCGACTGTGTCCGAGTAACCCACCAACCAGCT
EST: gi|351018968|gb|FQ426467.1|FQ426467
EST:     TAAAGAAGCACTTGAAGCGTCTGAACAGGCGTGCTGTTAAAACCATTAAG                         AGCCGAGATGGAGATATAATCGACTGTGTCCGAGTAACCCACCAACCAGCT
genomic: TAAAGAAGCACTTGAAGCGTCTGAACAAGCGTGCTGTTAAAACCATTAAGgttcgcttct ... ctaaaaacagAGCCGAGATGGAGATATAATCGACTGTGTCCGAGTAACCCACCAACCAGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTGGTTTTCTTGATACCCCCATCATCTGCCGGTGGTCGGAAGCTGGAGATAAAGAAGCACTTGAAGCGTCTGAACAAGCGTGCTGTTAAAACCATTAAGgttcgcttctttttccctttctttcactttttctcctttttcccctttttcccttttcctctaataatgattcttatatatcctaagccagctcgtgtta

- - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccttttcc