1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCCTCTTTCACAACGACCTCCTATTTGGAAAACCCCACCTCTTCTTCCCGTTTCACTTCCTTCAAATCTTCATCGCTTCCTAAATGGAGCCATTTCGGAGgtttctctctctctctctctctctctctcttattcttttctgtttatttctgtttggctgcccagaaaacggaggcaaatggtggacaagaaaaagaaat...
species | Vitis vinifera |
transcript | Vv13s0106g00620.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTTCACTTCCTTCAAATCTTCATCGCTTCCTAAATGGAGCCATTTCGGAG GGCAGAGGAGGACTATGTTCATCCAAACTCAATCCACACCTAATCCCGCATEST: gi|110721131|gb|EE097777.1|EE097777
genomic: TTTCACTTCCTTCAAATCTTCATCGCTTCCTAAATGGAGCCATTTCGGAGgtttctctct ... ctgtgctcagGGCAGAGGAGGACTATGTTCATCCAAACTCAATCCACACCTAATCCCGCAT
EST: TTTCACTTCCTTCAAATCTTCATCGCTTCCTAAATGGAGCCATTTCGGAG GGCAGAGGAGGACTATGTTCATCCAAACTCAATCCACACCTAATCCCGCATEST: gi|349819400|gb|FQ412294.1|FQ412294
genomic: TTTCACTTCCTTCAAATCTTCATCGCTTCCTAAATGGAGCCATTTCGGAGgtttctctct ... ctgtgctcagGGCAGAGGAGGACTATGTTCATCCAAACTCAATCCACACCTAATCCCGCAT
EST: TTTCACTTCCTTCAAATCTTCATCGCTTCCTAAATGGAGCCATTTCGGAG GGCAGAGGAGGACTATGTTCATCCAAACTCAATCCACACCTAATCCCGCATEST: gi|349819125|gb|FQ412019.1|FQ412019
genomic: TTTCACTTCCTTCAAATCTTCATCGCTTCCTAAATGGAGCCATTTCGGAGgtttctctct ... ctgtgctcagGGCAGAGGAGGACTATGTTCATCCAAACTCAATCCACACCTAATCCCGCAT
EST: TTTCACTTCCTTCAAATCTTCATCGCTTCCTAAATGGAGCCATTTCGGAG GGCAGAGGAGGACTATGTTCATCCAAACTCAATCCACACCTAATCCCGCATEST: gi|349813184|gb|FQ411424.1|FQ411424
genomic: TTTCACTTCCTTCAAATCTTCATCGCTTCCTAAATGGAGCCATTTCGGAGgtttctctct ... ctgtgctcagGGCAGAGGAGGACTATGTTCATCCAAACTCAATCCACACCTAATCCCGCAT
EST: CTTCACTTCCTTCAAATCTTCATCGCTTCCTAAATGGAGCCATTTCGGAG GGCAGAGGAGGACTATGTTCATCCAAACTCAATCCACACCTAATCCCGCATEST: gi|349820680|gb|FQ408509.1|FQ408509
genomic: TTTCACTTCCTTCAAATCTTCATCGCTTCCTAAATGGAGCCATTTCGGAGgtttctctct ... ctgtgctcagGGCAGAGGAGGACTATGTTCATCCAAACTCAATCCACACCTAATCCCGCAT
EST: TTTCACTTCCTTCAAATCTTCATCGCTTCCTAAATGGAGCCATTTCGGAG GGCAGAGGAGGACTATGTTCATCCAAACTCAATCCACACCTAATCCCGCATEST: gi|349824783|gb|FQ414641.1|FQ414641
genomic: TTTCACTTCCTTCAAATCTTCATCGCTTCCTAAATGGAGCCATTTCGGAGgtttctctct ... ctgtgctcagGGCAGAGGAGGACTATGTTCATCCAAACTCAATCCACACCTAATCCCGCAT
EST: TTTCACTTCCTTCAAATCTTCATCGCTTCCTAAATGGAGCCATTTCGGAG GGCAGAGGAGGACTATGTTCATCCAAACTCAATCCACACCTAATCCCGCATEST: gi|110426203|gb|EC992603.1|EC992603
genomic: TTTCACTTCCTTCAAATCTTCATCGCTTCCTAAATGGAGCCATTTCGGAGgtttctctct ... ctgtgctcagGGCAGAGGAGGACTATGTTCATCCAAACTCAATCCACACCTAATCCCGCAT
EST: TTTCACTTCCTTCAAATCTTCATCGCTTCCTAAATGGAGCCATTTCGGAG GGCAGAGGAGGACTATGTTCATCCAAACTCAATCCACACCTAATCCCGCATEST: gi|161716019|gb|FC068772.1|FC068772
genomic: TTTCACTTCCTTCAAATCTTCATCGCTTCCTAAATGGAGCCATTTCGGAGgtttctctct ... ctgtgctcagGGCAGAGGAGGACTATGTTCATCCAAACTCAATCCACACCTAATCCCGCAT
EST: TTTCACTTCCTTCAAATCTTCATCGCTTCCTAAATGGAGCCATTTCGGAG GGCAGAGGAGGACTATGTTCATCCAAACTCAATCCACACCTAATCCCGCAT
genomic: TTTCACTTCCTTCAAATCTTCATCGCTTCCTAAATGGAGCCATTTCGGAGgtttctctct ... ctgtgctcagGGCAGAGGAGGACTATGTTCATCCAAACTCAATCCACACCTAATCCCGCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCTCTTTCACAACGACCTCCTATTTGGAAAACCCCACCTCTTCTTCCCGTTTCACTTCCTTCAAATCTTCATCGCTTCCTAAATGGAGCCATTTCGGAGgtttctctctctctctctctctctctctcttattcttttctgtttatttctgtttggctgcccagaaaacggaggcaaatggtggacaagaaaaagaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaa