1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CGTCGGCGAATCGGGAAATGGCGGTGTATTGTTTCGACACCCTGGTCGCTCACTACAACAGCCAACAGCCCCCTCCTCCTGCCTTCGACGAGGCTCAACAgtattctccctagccacttttatttttatttattttatttatcatttttggtgttttattattattattattattattattgtcatttttatctttcagg...
species | Vitis vinifera |
transcript | Vv13s0101g00100.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCCCCTCCTCCTGCCTTCGACGAGGCTCAACA CCCTCTGTTTGTGACCTGGAAGAAAGTAGTGAATGGTGGGGAACCTCGTTTEST: gi|349827778|gb|FQ422646.1|FQ422646
genomic: CCCCCTCCTCCTGCCTTCGACGAGGCTCAACAgtattctccc ... ctggtttcagCCCTCTGTTTGTGACCTGGAAGAAAGTAGTGAATGGTGGGGAACCTCGTTT
EST: CACTACAACAGCCAACAGCCCCCTCCTCCTGCCTTCGACGAGGCTCAACA CCCTCTGTTTGTGACCTGGAAGAAAGTAGTGAATGGTGGGGAACCTCGTTTEST: gi|110401758|gb|EC968377.1|EC968377
genomic: CACTACAACAGCCAACAGCCCCCTCCTCCTGCCTTCGACGAGGCTCAACAgtattctccc ... ctggtttcagCCCTCTGTTTGTGACCTGGAAGAAAGTAGTGAATGGTGGGGAACCTCGTTT
EST: CACTACAACAGCCAACAGCCCCCTCCTCCTGCCTTCGACGAGGCTCAACA CCCTCTGTTTGTGACCTGGAAGAAAGTAGTGAATGGTGGGGAACCTCGTTTEST: gi|110384273|gb|EC948699.1|EC948699
genomic: CACTACAACAGCCAACAGCCCCCTCCTCCTGCCTTCGACGAGGCTCAACAgtattctccc ... ctggtttcagCCCTCTGTTTGTGACCTGGAAGAAAGTAGTGAATGGTGGGGAACCTCGTTT
EST: CACTACAACAGCCAACAGCCCCCTCCTCCTGCTTTCGACGAGGCTCAACA CCCTCTGTTTGTGACCTGAAAGAAAGGAGTGAATGGTGGGGAACCTCGTTTEST: gi|161711919|gb|FC060012.1|FC060012
genomic: CACTACAACAGCCAACAGCCCCCTCCTCCTGCCTTCGACGAGGCTCAACAgtattctccc ... ctggtttcagCCCTCTGTTTGTGACCTGGAAGAAAGTAGTGAATGGTGGGGAACCTCGTTT
EST: CACTACAACAGCCAACAGCCCCCTCCTCCTGCCTTCGACGAGGCTCAACA CCCTCTGTTTGTGACCTGGAAGACAGTAGTGAATGGTGGGGAACCEST: gi|26258672|gb|CA809735.1|CA809735
genomic: CACTACAACAGCCAACAGCCCCCTCCTCCTGCCTTCGACGAGGCTCAACAgtattctccc ... ctggtttcagCCCTCTGTTTGTGACCTGGAAGAAAGTAGTGAATGGTGGGGAACC
EST: CACTACAACAGCCAACAGCCCCCTCCTCCTGCCTTCGACGAGGCTCAACA CCCTCTGTTTGTGACCTGGAAGAAAGTAGTGAATGGTGGGGAACCTCGTTTEST: gi|71863642|gb|DT012697.1|DT012697
genomic: CACTACAACAGCCAACAGCCCCCTCCTCCTGCCTTCGACGAGGCTCAACAgtattctccc ... ctggtttcagCCCTCTGTTTGTGACCTGGAAGAAAGTAGTGAATGGTGGGGAACCTCGTTT
EST: CACTACAACAGCCAACAGCCCCCTCCTCCTGCCTTCGACGAGGCTCAACA CCCTCTGTTTGTGACCTGGAAGAAAGTAGTGAATGGTGGGGAACCTCGTTTEST: gi|26267150|gb|CA818213.1|CA818213
genomic: CACTACAACAGCCAACAGCCCCCTCCTCCTGCCTTCGACGAGGCTCAACAgtattctccc ... ctggtttcagCCCTCTGTTTGTGACCTGGAAGAAAGTAGTGAATGGTGGGGAACCTCGTTT
EST: CACTACAACAGCCAACAGCCCCCTCCTCCTGCCTTCGACGAGGCTCAACA CCCTCTGTTTGTGACCTGGAAGAAAGTAGTGAATGGTGGGGAACCTCGTTTEST: gi|110373876|gb|EC938294.1|EC938294
genomic: CACTACAACAGCCAACAGCCCCCTCCTCCTGCCTTCGACGAGGCTCAACAgtattctccc ... ctggtttcagCCCTCTGTTTGTGACCTGGAAGAAAGTAGTGAATGGTGGGGAACCTCGTTT
EST: CACTACAACAGCCAACAGCCCCCTCCTCCTGCCTTCGACGAGGCTCAACA CCCTCTGTTTGTGACCTGGAAGAAAGTAGTGAATGGTGGGGAACCTCGTTTEST: gi|26258698|gb|CA809761.1|CA809761
genomic: CACTACAACAGCCAACAGCCCCCTCCTCCTGCCTTCGACGAGGCTCAACAgtattctccc ... ctggtttcagCCCTCTGTTTGTGACCTGGAAGAAAGTAGTGAATGGTGGGGAACCTCGTTT
EST: CACTACAACAGCCAACAGCCCCCTCCTCCTGCCTTCGACGAGGCTCAACA CCCTCTGTTTGTGACCTGGAAGAAAGTAGTGAATGGTGGGGAACCTCGTTTEST: gi|161713972|gb|FC063157.1|FC063157
genomic: CACTACAACAGCCAACAGCCCCCTCCTCCTGCCTTCGACGAGGCTCAACAgtattctccc ... ctggtttcagCCCTCTGTTTGTGACCTGGAAGAAAGTAGTGAATGGTGGGGAACCTCGTTT
EST: CACTACAACAGCCAACATCCCCCTCCTCCTGCCTTCGACGAGGCTCAACA CCCTCTGTTTGTGACCTGGAAGAAAGGAGTGAATGGTGGGGAACCGCGTTTEST: gi|26265515|gb|CA816578.1|CA816578
genomic: CACTACAACAGCCAACAGCCCCCTCCTCCTGCCTTCGACGAGGCTCAACAgtattctccc ... ctggtttcagCCCTCTGTTTGTGACCTGGAAGAAAGTAGTGAATGGTGGGGAACCTCGTTT
EST: CACTACAACAGCCAACAGCCCCCTCCTCCTGCCTTCGACGAGGCTCAACA CCCTCTGTTTGTGACCTGGAAGAAAGGAGTGAATGGTGGGGAACCTCGTTTEST: gi|33408857|gb|CF214484.1|CF214484
genomic: CACTACAACAGCCAACAGCCCCCTCCTCCTGCCTTCGACGAGGCTCAACAgtattctccc ... ctggtttcagCCCTCTGTTTGTGACCTGGAAGAAAGTAGTGAATGGTGGGGAACCTCGTTT
EST: CACTACAACAGCCAACAGCCCCCTCCTCCTGCCTTCGACGAGGCTCAACA CCCTCTGTTTGTGACCTGGAAGAAAGTAGTGAATGGTGGGGAACCTCGTTTEST: gi|33410301|gb|CF215928.1|CF215928
genomic: CACTACAACAGCCAACAGCCCCCTCCTCCTGCCTTCGACGAGGCTCAACAgtattctccc ... ctggtttcagCCCTCTGTTTGTGACCTGGAAGAAAGTAGTGAATGGTGGGGAACCTCGTTT
EST: CACTACAACAGCCAACAGCCCCCTCCTCCTGCCTTCGACGAGGCTCAACA CCCTCTGTTTGTGACCTGGAAGAAAGGAGTGAATGGTGGGGAACCTCGTTTEST: gi|294966108|gb|GW837475.1|GW837475
genomic: CACTACAACAGCCAACAGCCCCCTCCTCCTGCCTTCGACGAGGCTCAACAgtattctccc ... ctggtttcagCCCTCTGTTTGTGACCTGGAAGAAAGTAGTGAATGGTGGGGAACCTCGTTT
EST: CACTACAACAGCCAACAGCCCCCTCCTCCTGCCTTCGACGAGGCTCAACA CCCTCTGTTTGTGACCTGGAAGAAAGTAGTGAATGGTGGGGAACCTCGTTTEST: gi|161707628|gb|FC056896.1|FC056896
genomic: CACTACAACAGCCAACAGCCCCCTCCTCCTGCCTTCGACGAGGCTCAACAgtattctccc ... ctggtttcagCCCTCTGTTTGTGACCTGGAAGAAAGTAGTGAATGGTGGGGAACCTCGTTT
EST: CACTACAACAGCCAACAGCCCCCTCCTCCTGCCTTCGACGAGGCTCAACA CCCTCTGTTTGTGACCTGGAAGAAAGTAGTGAATGGTGGGGAACCTCGTTT
genomic: CACTACAACAGCCAACAGCCCCCTCCTCCTGCCTTCGACGAGGCTCAACAgtattctccc ... ctggtttcagCCCTCTGTTTGTGACCTGGAAGAAAGTAGTGAATGGTGGGGAACCTCGTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGTCGGCGAATCGGGAAATGGCGGTGTATTGTTTCGACACCCTGGTCGCTCACTACAACAGCCAACAGCCCCCTCCTCCTGCCTTCGACGAGGCTCAACAgtattctccctagccacttttatttttatttattttatttatcatttttggtgttttattattattattattattattattgtcatttttatctttcagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcccta