Sequence
atgc intronic sequence ATGC exonic sequenceGGGAGGATTTACAAGGATTCTGCATTCAGGAAGTCCTGATAACCTGATGGAAGAGATTCCTACTTTTGTGGTTGATCCTCTTCCTGCAGGTTTGGATCGGgtgagaaatcttcttctgttattatacatctttgcttcttatattctttgttgtataacggcattcttttaggttgttggaaaattgcaagcaagctcca...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0084g00830.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA13G26610.1 (Glycine max), 5'ss of exon 2
GGGAGGATTTACAAGGATTCTGCATTCAGGAAGTCCTGATAACCTGATGGAAGAGATTCCTACTTTTGTGGTTGATCCTCTTCCTGCAGGTTTGGATCGGgtgagaaatcttcttctgttattatacatctttgcttcttatattctttgttgtataacggcattcttttaggttgttggaaa-attgcaagcaa-gctcca---
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GGGAGGATTCACGAGGATTCTACATTCTGGAAATCCTGACAACTTGATGGATGAAATTCCTACTGTTGTGGTTGATCCCCTTCCAGCAGGTTTGGATCGGgtgag---tttactgcaacttttcattatattt-ttttttatgttgtttgctaattccttatgtt-tttcagccgattggatttatagtttataatgtttctgtt
upper sequence: Vv13s0084g00830.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA15G37490.2 (Glycine max), 5'ss of exon 2
GGGAGGATTTACAAGGATTCTGCATTCAGGAAGTCCTGATAACCTGATGGAAGAGATTCCTACTTTTGTGGTTGATCCTCTTCCTGCAGGTTTGGATCGGgtgagaaatcttcttctgttattatacatc-tttgcttcttatattctttgttgtataacggcattctttta--ggttg--ttggaaaattgcaagcaagctcca-
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GGGAGGATTCACCAGGATTCTGCATTCTGGAAATCCTGACAACTTGATGAATGAAATTCCTACTGTTGTGGTTGATCCCCTTCCAGCAGGTTTGGACCGGgtgag------tttactgcaactttacattgtattttttatatgttgtttgctaattccctattttattcaactgattggctttgtagtttataatatttttgttg
upper sequence: Vv13s0084g00830.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT5G13500.1 (Arabidopsis thaliana), 5'ss of exon 2
GGGAGGATTTACAAGGATTCTGCATTCAGGAAGTCCTGATAACCTGATGGAAGAGATTCCTACTTTTGTGGTTGATCCTCTTCCTGCAGGTTTGGATCGGgtgagaaatcttcttctgttattatacatc--tttgcttcttatattctttgttgtataacggcattcttttaggttgttggaaaattgcaagcaagc-tcca-
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GGGTGGCTTCACCCGTATTTTGCATTCCGGTAATTCTGATAACTTGATGGATGAAATACCCACATTTGTGGTTGATCCTCTTCCTCCAGGTCTTGATCGGgtaagaatttttattttattcccgtttctccatttggtctcactttttgttgatggtttatcactgattcactcttttttgtaatcttgtaatcttgtatttagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30128013|gb|CB913352.1|CB913352EST: AAGAGATTCCTACTTTTGTGGTTGATCCTCTTCCTGCAGGTTTGGATCGG GGATACATTGTCCTAAACAGACCATGGGCCTTTGTGCAATGGCTGGAAAAG
genomic: AAGAGATTCCTACTTTTGTGGTTGATCCTCTTCCTGCAGGTTTGGATCGGgtgagaaatc ... ctgtatccagGGATACATTGTCCTAAACAGACCATGGGCCTTTGTGCAATGGCTGGAAAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGGAGGATTTACAAGGATTCTGCATTCAGGAAGTCCTGATAACCTGATGGAAGAGATTCCTACTTTTGTGGTTGATCCTCTTCCTGCAGGTTTGGATCGGgtgagaaatcttcttctgttattatacatctttgcttcttatattctttgttgtataacggcattcttttaggttgttggaaaattgcaagcaagctcca
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggaaaa