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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTTTCTCTCAACCATGGGATGAGCCACTATGTTCTGGTGGTTTACAGGCATGCCTTTGCCACTGCCGTGATTGCGCCTTTTGCTATCTTCCTTGAGAGgtacattacatgaactgaaatcagaaaaaatagcttttcttggatcagttccctcggaaatttattgattctttcatgtttttttttatgttccag

Basic information

species Vitis vinifera
transcript Vv13s0084g00090.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0084g00090.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA04G15590.1 (Glycine max), 5'ss of exon 1
AGGTTTCTCTCAACCATGGGATGAGCCACTATGTTCTGGTGGTTTACAGGCATGCCTTTGCCACTGCCGTGATTGCGCCTTTTGCTATCTTCCTTGAGAGgtacattacatgaactgaaatc----agaaaa--aatagcttttcttggatcagttccctcggaaat-ttattgattctttc--atgtttttttttatgttccag
||||||| ||||||| ||| |||||||||||||| || || |||||  | ||||||||||||||||| ||  | || || |||||  || ||||||| |||| ||||  || | |    | |    || ||   |  ||   || || | |   ||       ||   ||||  |||  | |  |||  |  ||| |  || |||
AGGTTTCCCTCAACCGTGGCATGAGCCACTATGTACTTGTTGTTTATCGCCATGCCTTTGCCACTGCTGTCGTCGCTCCATTTGCCTTCATCCTTGAAAGgttcattgaataagcatgcaccttatagcaagccatcagaagttttttgttttcttaatataaaagcattataaattaatgctaatgcatggtttca-atttcag

upper sequence: Vv13s0084g00090.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA06G46740.1 (Glycine max), 5'ss of exon 1
AGGTTTCTCTCAACCATGGGATGAGCCACTATGTTCTGGTGGTTTACAGGCATGCCTTTGCCACTGCCGTGATTGCGCCTTTTGCTATCTTCCTTGAGAGgt--acattacatgaactgaaatcagaaaa----aatagcttttcttggatcagttccctcggaaatttattgattctttcatgtttttttttatgttccag--------------------------------
|| |||| ||||||| ||| |||||||||||||| || || |||||  | ||||||||||||||||| ||  | || || |||||  || || |||| ||||  | |  |||   ||  |    |||||     ||||  |||| |||   |  |||      |  ||| ||| ||  || |||   ||       |  ||                                 
AGATTTCCCTCAACCGTGGCATGAGCCACTATGTCCTCGTTGTTTATCGTCATGCCTTTGCCACTGCTGTTGTCGCTCCATTTGCCTTCATCTTTGAAAGgttcatacaacaaccacccaccctagaaagtcataataagtttt-ttgtgccttttcaaaaaaagtttttttgttttgtttatgcaattaaaagcatcacaaattaatgctaatgcattgtttcaatttcacag

upper sequence: Vv13s0084g00090.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA15G36200.1 (Glycine max), 5'ss of exon 1
AGGTTTCTCTCAACCATGGGATGAGCCACTATGTTCTGGTGGTTTACAGGCATGCCTTTGCCACTGCCGTGATTGCGCCTTTTGCTATCTTCCTTGAGAGg--tacattacatgaactgaaatc--agaaaaaatagcttttc-ttggatcagttccc-tcggaaa--tttattgattctttcatgt---ttttttttatgttccag
|||||||||||||||| || |||||||||||||| || ||||| ||  | || || |||||||| || || || || |||||||| ||  |  |||| |||  || || | || |||  ||| |  ||    |  | ||| || ||  |  ||||    ||  |||  |||    |||  | | |     || |||  || ||||||
AGGTTTCTCTCAACCAAGGCATGAGCCACTATGTCCTTGTGGTCTATCGCCACGCTTTTGCCACCGCTGTCATAGCTCCTTTTGCCATTATTTTTGAAAGgtttatataaaataaacataaaccctagtgtcatcaccttgtcattttactagtttttgtcataaagctttgcaaattaatgcttactcattgtttcaattttccag

upper sequence: Vv13s0084g00090.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA13G25890.1 (Glycine max), 5'ss of exon 1
AGGTTTCTCTCAACCATGGGATGAGCCACTATGTTCTGGTGGTTTACAGGCATGCCTTTGCCACTGCCGTGATTGCGCCTTTTGCTATCTTCCTTGAGAGgtacattacatgaactgaaatcagaa---------------aaaatagcttttcttggatcagttccctcggaaatttattgattctttcatgtt---tttttttatgttccag
||||||| |||||||| || |||||||||||||| || ||||||||  | || || |||||||| || || || || ||||||||  |  |  |||| |||| |||   || |||  ||| |  |                |   ||   | ||||   |  ||| |     |  |||    |||  | | |  |   | |||  || ||||||
AGGTTTCCCTCAACCAAGGCATGAGCCACTATGTCCTTGTGGTTTATCGCCACGCTTTTGCCACCGCTGTCATCGCTCCTTTTGCCTTTATTTTTGAAAGgttcatagaataaacataaaccttagtgtcatcatcttgtcattttactctctcttttttttgttactataaagctttgcaaattaatgcttactcattgtttcaattttccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110720884|gb|EE097197.1|EE097197
EST:     CATGCCTTTGCCACTGCCGTGATTGCGCCTTTTGCTATCTTCCTTGAGAG                         GAAGGCGCAACCAAAGATAACATTCCGCGTTTTCATGCAAATATTTGTTTT
genomic: CATGCCTTTGCCACTGCCGTGATTGCGCCTTTTGCTATCTTCCTTGAGAGgtacattaca ... tatgttccagGAAGGCGCAACCAAAGATAACATTCCGCGTTTTCATGCAAATATTTGTTTT
EST: gi|161708030|gb|FC056079.1|FC056079
EST:     CATGCCTTTGCCACTGCCGTGATTGCGCCTTTTGCTATCTTCCTTGAGAG                         GAAGGCGCAACCAAAGATAACATTCCGCGTTTTCATGCAAATATTTGTTTT
genomic: CATGCCTTTGCCACTGCCGTGATTGCGCCTTTTGCTATCTTCCTTGAGAGgtacattaca ... tatgttccagGAAGGCGCAACCAAAGATAACATTCCGCGTTTTCATGCAAATATTTGTTTT
EST: gi|161720490|gb|FC070602.1|FC070602
EST:     CATGCCTTTGCCACTGCCGTGATTGCGCCTTTTGCTATCTTCCTTGAGAG                         GAAGGCGCAACCAAAGATAACATTCCGCGTTTTCATGCAAATATTTGTTTT
genomic: CATGCCTTTGCCACTGCCGTGATTGCGCCTTTTGCTATCTTCCTTGAGAGgtacattaca ... tatgttccagGAAGGCGCAACCAAAGATAACATTCCGCGTTTTCATGCAAATATTTGTTTT
EST: gi|28969851|gb|CB348884.1|CB348884
EST:     CATGCCTTTGCCACTGCCGTGATTGCGCCTTTTGCTATCTTCCTTGAGAG                         GAAGGCGCAACCAAAGATAACATTCCGCGTTTTCATGCAAATATTTGTTTT
genomic: CATGCCTTTGCCACTGCCGTGATTGCGCCTTTTGCTATCTTCCTTGAGAGgtacattaca ... tatgttccagGAAGGCGCAACCAAAGATAACATTCCGCGTTTTCATGCAAATATTTGTTTT
EST: gi|161705929|gb|FC054823.1|FC054823
EST:     CATGCCTTTGCCACTGCCGTGATTGCGCCTTTTGCTATCTTCCTTGAGAG                         GAAGGCGCAACCAAAGATAACATTCCGCGTTTTCATGCAAATATTTGTTTT
genomic: CATGCCTTTGCCACTGCCGTGATTGCGCCTTTTGCTATCTTCCTTGAGAGgtacattaca ... tatgttccagGAAGGCGCAACCAAAGATAACATTCCGCGTTTTCATGCAAATATTTGTTTT
EST: gi|161716308|gb|FC065874.1|FC065874
EST:     CATGCCTTTGCCACTGCCGTGATTGCGCCTTTTGCTATCTTCCTTGAGAG                         GAAGGCGCAACCAAAGATAACATTCCGCGTTTTCATGCAAATATTTGTTTT
genomic: CATGCCTTTGCCACTGCCGTGATTGCGCCTTTTGCTATCTTCCTTGAGAGgtacattaca ... tatgttccagGAAGGCGCAACCAAAGATAACATTCCGCGTTTTCATGCAAATATTTGTTTT
EST: gi|161720390|gb|FC069845.1|FC069845
EST:     CATGCCTTTGCCACTGCCGTGATTGCGCCTTTTGCTATCTTCCTTGAGAG                         GAAGGCGCAACCAAAGATAACATTCCGCGTTTTCATGCAAATATTTGTTTT
genomic: CATGCCTTTGCCACTGCCGTGATTGCGCCTTTTGCTATCTTCCTTGAGAGgtacattaca ... tatgttccagGAAGGCGCAACCAAAGATAACATTCCGCGTTTTCATGCAAATATTTGTTTT
EST: gi|352791162|gb|FQ477489.1|FQ477489
EST:     CATGCCTTTGCCACTGCCGTGATTGCGCCTTTTGCTATCTTCCTTGAGAG                         GAAGGCGCAACCAAAGATAACATTCCGCGTTTTCATGCAAATATTTGTTTT
genomic: CATGCCTTTGCCACTGCCGTGATTGCGCCTTTTGCTATCTTCCTTGAGAGgtacattaca ... tatgttccagGAAGGCGCAACCAAAGATAACATTCCGCGTTTTCATGCAAATATTTGTTTT