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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAATTCCGGCTCCAAGAACCGCCGAGTCCACTCACCATCGACTCTTCGAGTTCGCAAAAACAGCCCTCATCAAGATCTTCGTCTCTCCCTACGCCACCgtacgtgccctaaccctctcctcacctcactctttctaaaacactgctgatgaacggtgtcgttttcggttggttttgtgaag

Basic information

species Vitis vinifera
transcript Vv13s0074g00190.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71855291|gb|DT004346.1|DT004346
EST:     AGTTCGCAAAAACAGCCCTCATCAAGATCTTCGTCTCTCCCTACGCCACC                         GTGTGCGATCTCTACGCCGGAGCAGGATCCGACGCAGACAAGTGGGACGAA
genomic: AGTTCGCAAAAACAGCCCTCATCAAGATCTTCGTCTCTCCCTACGCCACCgtacgtgccc ... ttttgtgaagGTGTGCGATCTCTACGCCGGAGCAGGATCCGACGCAGACAAGTGGGACGAA
EST: gi|110685378|gb|EE062046.1|EE062046
EST:     AGTTCGCAAAAACAGCCCTCATCAAGATCTTCGTCTCTCCCTACGCCACC                         GTGTGCGATCTCTACGCCGGAGCAGGATCCGACGCAGACAAGTGGGACGAA
genomic: AGTTCGCAAAAACAGCCCTCATCAAGATCTTCGTCTCTCCCTACGCCACCgtacgtgccc ... ttttgtgaagGTGTGCGATCTCTACGCCGGAGCAGGATCCGACGCAGACAAGTGGGACGAA
EST: gi|110722057|gb|EE097952.1|EE097952
EST:     AGTTCGCAAAAACAGCCCTCATCAAGATCTTCGTCTCTCCCTACGCCACC                         GTGTGCGATCTCTACGCCGGAGCAGGATCCGACGCAGACAAGTGGGACGAA
genomic: AGTTCGCAAAAACAGCCCTCATCAAGATCTTCGTCTCTCCCTACGCCACCgtacgtgccc ... ttttgtgaagGTGTGCGATCTCTACGCCGGAGCAGGATCCGACGCAGACAAGTGGGACGAA
EST: gi|161708045|gb|FC056094.1|FC056094
EST:     AGTTCGCAAAAACAGCCCTCATCAAGATCTTCGTCTGGCCCTACGCCACC                         GTGTGCGATCTCTACGCCGGAGCAGGATCCGACGCAGACAAGTGGGACGAA
genomic: AGTTCGCAAAAACAGCCCTCATCAAGATCTTCGTCTCTCCCTACGCCACCgtacgtgccc ... ttttgtgaagGTGTGCGATCTCTACGCCGGAGCAGGATCCGACGCAGACAAGTGGGACGAA
EST: gi|110703995|gb|EE081418.1|EE081418
EST:     AGTTCGCAAAAACAGCCCTCATCAAGATCTTCGTCTCTCCCTACGCCACC                         GTGTGCGATCTCTACGCCGGAGCAGGATCCGACGCAGACAAGTGGGACGAA
genomic: AGTTCGCAAAAACAGCCCTCATCAAGATCTTCGTCTCTCCCTACGCCACCgtacgtgccc ... ttttgtgaagGTGTGCGATCTCTACGCCGGAGCAGGATCCGACGCAGACAAGTGGGACGAA