1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GAGAAGAAGATCAGTGGCTGGGGATTGTTCGGTTCCAAATACGAAGATGCTGCTGATTTCTACGATAAGGCTGCCAACTGCTTCAAACTCGCCAAATCCTgtattttccagtttctttaaatcccacaaattttcccttcttttttttttttcatagcgggaatttaaatgagagaaaggattagaaatgcttaagaaaa...
species | Vitis vinifera |
transcript | Vv13s0067g02210.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGCTGATTTCTACGATAAGGCTGCCAACTGCTTCAAACTCGCCAAATCCT GGGACAGAGCTGGATCGACTTATGTCAAGTTGTCAAACTGTTATACAAAGEST: gi|32272370|gb|CD721529.1|CD721529
genomic: TGCTGATTTCTACGATAAGGCTGCCAACTGCTTCAAACTCGCCAAATCCTgtattttcca ... ggtgtttcagGGGACAGAGCTGGATCGACTTATGTCAAGTTGTCAAACTGTTATACAAAG
EST: CTGATTTCTACGATAAGGCTGCCAACTGCTTCAAACTCGCCAAATCCT GGGACAGAGCTGGATCGACTTATGTCAAGTTGTCAAACTGTTATACAAAGEST: gi|294966919|gb|GW839794.1|GW839794
genomic: CTGATTTCTACGATAAGGCTGCCAACTGCTTCAAACTCGCCAAATCCTgtattttcca ... ggtgtttcagGGGACAGAGCTGGATCGACTTATGTCAAGTTGTCAAACTGTTATACAAAG
EST: TGCTGATTTCTACGATAAGGCTGCCAACTGCTTCAAACTCGCCAAATCCT GGGACAGAGCTGGATCGACTTATGTCAAGTTGTCAAACTGTTATACAAAGEST: gi|30327709|gb|CD010971.1|CD010971
genomic: TGCTGATTTCTACGATAAGGCTGCCAACTGCTTCAAACTCGCCAAATCCTgtattttcca ... ggtgtttcagGGGACAGAGCTGGATCGACTTATGTCAAGTTGTCAAACTGTTATACAAAG
EST: CTGATTTCTACGATAAGGCTGCCAACTGCTTCAAACTCGCCAAATCCT GGGACAGAGCTGGATCGACTTATGTCAAGTTGTCAAACTGTTATACAAAG
genomic: CTGATTTCTACGATAAGGCTGCCAACTGCTTCAAACTCGCCAAATCCTgtattttcca ... ggtgtttcagGGGACAGAGCTGGATCGACTTATGTCAAGTTGTCAAACTGTTATACAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGAAGAAGATCAGTGGCTGGGGATTGTTCGGTTCCAAATACGAAGATGCTGCTGATTTCTACGATAAGGCTGCCAACTGCTTCAAACTCGCCAAATCCTgtattttccagtttctttaaatcccacaaattttcccttcttttttttttttcatagcgggaatttaaatgagagaaaggattagaaatgcttaagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcccttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taagaaa