1 5' 3' | 2 5' 3' | 3 5' 3' |
GGACACTCTTAAAGAAGCCAAAGCTGGTGACACAACCATGCAGGTTTTGGTGGGTCAAATGTACTTCAGTGGCTATGGAGTTTCCAGAGATGCTCAGAAGgtcaatccattgattttctagttttcttttgcttttgggcttcttaatttttgtgggtttttgttgttagcgccattgtcatcatggtcatgtgtgtgct...
species | Vitis vinifera |
transcript | Vv13s0067g02170.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGGGTCAAATGTACTTCAGTGGCTATGGAGTTTCCAGAGACGCTCAGAAG GGCCGGGCTTGGATTAGTAGAGCTTCCAAGAGTCGATCGTCAGCTTGGAAAEST: gi|32247888|gb|CD713707.1|CD713707
genomic: TGGGTCAAATGTACTTCAGTGGCTATGGAGTTTCCAGAGATGCTCAGAAGgtcaatccat ... ggcaattcagGGCCGGGCTTGGATTAGTAGAGCTTCCAAGAGTCGATCGTCAGCTTTGAAA
EST: TGGGTCAAATGTACTTCAGTGGCTATGGAGTTTCCAGAGATGCTCAGAAG GGCCGGGCTTGGATTAGTAGAGCTTCCAAGAGTCGATCGTCAGCTTTGAAAEST: gi|32248059|gb|CD713878.1|CD713878
genomic: TGGGTCAAATGTACTTCAGTGGCTATGGAGTTTCCAGAGATGCTCAGAAGgtcaatccat ... ggcaattcagGGCCGGGCTTGGATTAGTAGAGCTTCCAAGAGTCGATCGTCAGCTTTGAAA
EST: TGGGTCAAATGTACTTCAGTGGCTATGGAGTTTCCAGAGATGCTCAGAAG GGCCGGGCTTGGATTAGTAGAGCTTCCAAGAGTCGATCGTCAGCTTTGAAAEST: gi|30320475|gb|CD003737.1|CD003737
genomic: TGGGTCAAATGTACTTCAGTGGCTATGGAGTTTCCAGAGATGCTCAGAAGgtcaatccat ... ggcaattcagGGCCGGGCTTGGATTAGTAGAGCTTCCAAGAGTCGATCGTCAGCTTTGAAA
EST: TGGGTCAAATGTACTTCAGTGGCTATGGAGTTTCCAGAGATGCTCAGAAG GGCCGGGCTTGGATTAGTAGAGCTTCCAAGAGTCGATCGTCAGCTTTGAAAEST: gi|32268182|gb|CD717341.1|CD717341
genomic: TGGGTCAAATGTACTTCAGTGGCTATGGAGTTTCCAGAGATGCTCAGAAGgtcaatccat ... ggcaattcagGGCCGGGCTTGGATTAGTAGAGCTTCCAAGAGTCGATCGTCAGCTTTGAAA
EST: TGGGTCAAATGTACTTCAGTGGCTATGGAGTTTCCAGAGATGCTCAGAAG GGCCGGGCTTGGATTAGTAGAGCTTCCAAGAGTCGATCGTCAGCTTTGAAAEST: gi|32268350|gb|CD717509.1|CD717509
genomic: TGGGTCAAATGTACTTCAGTGGCTATGGAGTTTCCAGAGATGCTCAGAAGgtcaatccat ... ggcaattcagGGCCGGGCTTGGATTAGTAGAGCTTCCAAGAGTCGATCGTCAGCTTTGAAA
EST: TGGGTCAAATGTACTTCAGTGGCTATGGAGTTTCCAGAGATGCTCAGAAG GGCCGGGCTTGGATTAGTAGAGCTTCCAAGAGTCGATCGTCAGCTTTGAAA
genomic: TGGGTCAAATGTACTTCAGTGGCTATGGAGTTTCCAGAGATGCTCAGAAGgtcaatccat ... ggcaattcagGGCCGGGCTTGGATTAGTAGAGCTTCCAAGAGTCGATCGTCAGCTTTGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGACACTCTTAAAGAAGCCAAAGCTGGTGACACAACCATGCAGGTTTTGGTGGGTCAAATGTACTTCAGTGGCTATGGAGTTTCCAGAGATGCTCAGAAGgtcaatccattgattttctagttttcttttgcttttgggcttcttaatttttgtgggtttttgttgttagcgccattgtcatcatggtcatgtgtgtgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG