1 5' 3' | 2 5' 3' | 3 5' 3' |
AGGGTTGAAGAAGCATTTGAAGAGGCTCAATGCACCGAAGCATTGGATGCTAGACAAGCTTGGAGGTGCATTTgtaagtcaaaaatctgttcctgattcatatttttctatcgactcatttcacacccttatctcacatccaaaatcattgatggctcatccataatcctatttgtatag
species | Vitis vinifera |
transcript | Vv13s0067g01820.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGCTCAATGCACCGAAGCATTGGATGCTAGACAAGCTTGGAGGTGCATTT GCTCCAAAGCCTTCATCTGGACCTCACAAATCCAGGGAATGCCTGCCATTGEST: gi|26267144|gb|CA818207.1|CA818207
genomic: GGCTCAATGCACCGAAGCATTGGATGCTAGACAAGCTTGGAGGTGCATTTgtaagtcaaa ... atttgtatagGCTCCAAAGCCTTCATCTGGACCTCACAAATCCAGGGAATGCCTGCCATTG
EST: GGCTCAATGCACCGAAGCATTGGATGCTAGACAAGCTTGGAGGTGCATTT GCTCCAAAGCCTTCATCTGGACCTCACAAATCCAGGGAATGCCTGCCATTGEST: gi|110686698|gb|EE064634.1|EE064634
genomic: GGCTCAATGCACCGAAGCATTGGATGCTAGACAAGCTTGGAGGTGCATTTgtaagtcaaa ... atttgtatagGCTCCAAAGCCTTCATCTGGACCTCACAAATCCAGGGAATGCCTGCCATTG
EST: GGCTCAATGCACCGAAGCATTGGATGCTAGACAAGCTTGGAGGTGCATTT GCTCCAAAGCCTTCATCTGGACCTCACAAATCCAGGGAATGCCTGCCATTGEST: gi|161717629|gb|FC066908.1|FC066908
genomic: GGCTCAATGCACCGAAGCATTGGATGCTAGACAAGCTTGGAGGTGCATTTgtaagtcaaa ... atttgtatagGCTCCAAAGCCTTCATCTGGACCTCACAAATCCAGGGAATGCCTGCCATTG
EST: GAAGCATTGGATGCTAGACAAGCTTGGAGGTGCATTT GCTCCAAAGCCTTCATCTGGACCTCACAAATCCAGGGAATGCCTGCCATTGEST: gi|110708636|gb|EE086405.1|EE086405
genomic: GAAGCATTGGATGCTAGACAAGCTTGGAGGTGCATTTgtaagtcaaa ... atttgtatagGCTCCAAAGCCTTCATCTGGACCTCACAAATCCAGGGAATGCCTGCCATTG
EST: GGCTCAATGCACCGAAGCATTGGATGCTAGACAAGCTTGGAGGTGCATTT GCTCCAAAGCCTTCATCTGGACCTCACAAATCCAGGGAATGCCTGCCATTG
genomic: GGCTCAATGCACCGAAGCATTGGATGCTAGACAAGCTTGGAGGTGCATTTgtaagtcaaa ... atttgtatagGCTCCAAAGCCTTCATCTGGACCTCACAAATCCAGGGAATGCCTGCCATTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGGTTGAAGAAGCATTTGAAGAGGCTCAATGCACCGAAGCATTGGATGCTAGACAAGCTTGGAGGTGCATTTgtaagtcaaaaatctgttcctgattcatatttttctatcgactcatttcacacccttatctcacatccaaaatcattgatggctcatccataatcctatttgtatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG