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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGCTGCAGCGGCTTATTTCAACCATTGGGCTGTTTGGCCTCTGTACTGGTTCGCTCAGGGGACCATGTTCTGGGCTCTCTTTGTTCTTGGTCATGACTGgtaatctattttcttcttgattttcctgttgaatttcaagacccaattctctgtttttaatgggattgtgttattctggattgtacag

Basic information

species Vitis vinifera
transcript Vv13s0067g01120.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0067g01120.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT3G11170.1 (Arabidopsis thaliana), 5'ss of exon 1
CGGCTGCAGCGGCTTATTTCAACCATTGGGCTGTTTGGCCTCTGTACTGGTTCGCTCAGGGGACCATGTTCTGGGCTCTCTTTGTTCTTGGTCATGACTGgtaatct-----------attttcttcttgattttcctgttgaatttcaagacccaattctctgtttttaatgggattgtgttattctggattgtacag-
| |||| ||| |||||  ||||| |||||  |||||||||||| || ||| ||||||| || |||||||| ||||||||||||||||||||||||||||||||| ||           | ||| |||||| |||  |   ||  ||      |   |  || || |||        |||  | ||||   |      |  
CTGCTGGAGCTGCTTACCTCAACAATTGGATTGTTTGGCCTCTCTATTGGCTCGCTCAAGGAACCATGTTTTGGGCTCTCTTTGTTCTTGGTCATGACTGgtaaacttaaaaaccctaacttttttcttgttttctcctctgctttagtctcctttagcctttgatttggtcaactttggatgattccaaagaaccaatc

upper sequence: Vv13s0067g01120.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT5G05580.1 (Arabidopsis thaliana), 5'ss of exon 1
CGGCTGCAGCGGCTTATTTCAACCATTGGGCTGTTTGGCCTCTGTACTGGTTCGCTCAGGGGACCATGTTCTGGGCTCTCTTTGTTCTTGGTCATGACTGgta---atctattttctt-cttgattttcctgtt--gaatttcaagacccaattctctgtttttaatgggattgtgttattctggattgtacag
| ||||  || ||||| |||||| |||||  | | |||||||| |||||||||||||| || ||||||||||||||||||||||| ||||| |||||||||||   |   ||  || | ||| || | |||  |   | | |   || |    ||| | || ||||     |  |  | || |  |   | |||
CTGCTGTTGCTGCTTACTTCAACAATTGGCTTCTCTGGCCTCTCTACTGGTTCGCTCAAGGAACCATGTTCTGGGCTCTCTTTGTCCTTGGCCATGACTGgtatcaactaatcctcatgcttcatctgcctacttcaagtgttttgatctctctctatattgttaaccaagtattcatgttgtttaccttgcag

upper sequence: Vv13s0067g01120.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: EDP09401 (Chlamydomonas reinhardtii), 5'ss of exon 4
CGGCTGCAGCGGCTTATTTCAACCATTGGGCTGTTTGGCCTCTGTACTGGTTCGCTCAGGGGACCATGTTCTGGGCTCTCTTTGTTCTTGGTCATGACTGgtaatctattttcttcttgat----tttcctgttgaatttcaa------gacccaattctctgtttttaatgggattgtgttattctggattgtacag--------------------------------------
                            |    | ||||| ||||||||| | |||||||| ||||||||||||||||| |||||  | || || ||||||| |    |  |   | | ||     ||| |||      |||       | |  | ||  |  ||      |  |   |||  | | |  |    ||                                       
----------------------------GTGGATGTGGCCCCTGTACTGGGTTGCTCAGGGTACCATGTTCTGGGCTCTGTTTGTGGTCGGCCACGACTGgtgagtggtcctgcacataatgtggcttcatgtctgtcctcactgtaccggctgagttggcctttcccgtcgacaccatgtagtgcagactccagcaaatcattaacgccccttcacttgccttttgcccacacag

upper sequence: Vv13s0067g01120.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: PP1S98_209V6.1 (Physcomitrella patens), 5'ss of exon 1
CGGCTGCAGCGGCTTATTTCAACCATTGGGCTGTTTGGCCTCTGTACTGGTTCGCTCAGGGGACCATGTTCTGGGCTCTCTTTGTTCTTGGTCATGACTGgtaat----ctattttcttcttgattttcc-----tgttgaattt---caagacccaattctctgtttttaatgggat-tgtgttattctg-gattgtacag
||||||  || ||   ||| |||   |||  |||||||||  |||||||| | || || || |||||||||||||||||||| || || ||||| ||||||||||    |||    ||  | ||  ||       |||| |||||     || |    |   |  ||     || ||   |||  || ||| || ||     
CGGCTGGCGCTGCAGCTTTGAACAGCTGGTTTGTTTGGCCGTTGTACTGGCTGGCACAAGGAACCATGTTCTGGGCTCTCTTCGTGCTGGGTCACGACTGgtaattgcactaaaacctgttcgagattgagtgaatgtttaatttgtgtgaggctgtgtggacaattccatgtgagagacgtggaatcctgtgagtgctt--

upper sequence: Vv13s0067g01120.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: EFJ23113 (Selaginella moellendorffii), 5'ss of exon 1
CGGCTGCAGCGGCTTATTTCAACCATTGGGCTGTTTGGCCTCTGTACTGGTTCGCTCAGGGGACCATGTTCTGGGCTCTCTTTGTTCTTGGTCATGACTGgtaa-tctattttcttcttgattttcctgttgaatttcaagacccaattctctgtttttaatgggattgtgttattctggattgtacag
| ||||  || ||||| || ||  |||||   || ||||| || ||||||   || || ||||| |||||||||||||||||||| || || |||||||||||| | | | |||| |   |   |  | ||   ||||  |  |   ||    || ||| ||  |                        
CTGCTGGTGCTGCTTACTTGAATAATTGGCTCGTCTGGCCACTCTACTGGGCTGCCCAAGGGACGATGTTCTGGGCTCTCTTTGTGCTCGGCCATGACTGgtaagtttttcttctcccaaaaacttgtttttgctttctcgttc---ttacgcgtctttgatcag------------------------

upper sequence: Vv13s0067g01120.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: EFJ20170 (Selaginella moellendorffii), 5'ss of exon 1
CGGCTGCAGCGGCTTATTTCAACCATTGGGCTGTTTGGCCTCTGTACTGGTTCGCTCAGGGGACCATGTTCTGGGCTCTCTTTGTTCTTGGTCATGACTGgtaatctattttcttcttgattttcctgttgaatttcaagacccaattctctgtttttaatgggattgtgttattctggattgtacag
| ||||  || ||||| || ||  |||||   || ||||| || ||||||   || || || || |||||||||||||||||||| || || ||||||||||||  | || ||| |  |   |   | ||   ||||  || |   ||    || ||| ||  |                        
CTGCTGGTGCTGCTTACTTGAATAATTGGCTCGTCTGGCCACTCTACTGGGCTGCCCAAGGCACGATGTTCTGGGCTCTCTTTGTGCTCGGCCATGACTGgtaagtttttctctcccagcaatgtttttt--ctttctcgatc---ttacgcgtctttgatcag------------------------