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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGGCTGACTCCAAGTGTTCCACGGTTGGGATTCAAGGGATTGCTTGGGCTTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtgatggccttttctcgaaaaaccttttgtctatttcatgtatgtaatatgagaattctgtgatgagacggaaagtggtggcggtgcag

Basic information

species Vitis vinifera
transcript Vv13s0067g00220.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0067g00220.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os02g44630.3 (Oryza sativa), 5'ss of exon 1
AGGGCTGACTCCAAGTGTTCCACGGTTGGGATTCAAGGGATTGCTTGGGCTTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtgatggccttttctcgaaaaaccttttgtctatttcatgtatgtaatatgagaattctgtgatgagacggaaagtggtggcggtgcag-----------
| | |   |||||||||  |||| || || || || || || || ||| | || || || ||||||||||| |||||||||||||||||||| ||||| ||| |   |  | ||         | |    |   |||| |     ||      || | ||| ||||    |     | | |   |||             
AAGTCCTCCTCCAAGTGCGCCACCGTCGGCATCCAGGGCATCGCCTGGTCCTTCGGAGGCATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtcagttcactctcctttggcttcctcccccaccttcaagatctcaagtcttcaactttgtcatgattttgccttggtttgtcttgctagttgatactta

upper sequence: Vv13s0067g00220.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G392975_T01 (Zea mays), 5'ss of exon 2
AGGGCTGACTCCAAGTGTTCCACGGTTGGGATTCAAGGGATTGCTTGGGCTTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgt------gatggccttttctcgaaaaaccttttgtctatttcatgtatgtaatatgaga-attctgtgatgagacggaaagtggtggc--ggtgcag--
| | |   |||||||||  |||| || || || || || || || ||| | || || || ||||||||||| |||||||||||||||||||| ||||| |||      | |  ||||   ||       |||    ||  | |  |  | |  |   ||      ||||||| || |     |  |  |    |||    
AAGTCCACCTCCAAGTGCGCCACCGTCGGCATCCAGGGCATCGCCTGGTCCTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagctctccttccttccttccttcttgctgctgctgctggcttctttttccagccgacatgtgatgtgatgagctttattaacctactgcgatt

upper sequence: Vv13s0067g00220.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AC209208.3_FGT002 (Zea mays), 5'ss of exon 1
AGGGCTGACTCCAAGTGTTCCACGGTTGGGATTCAAGGGATTGCTTGGGCTTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtga-----tggccttttctcgaaaaaccttttgtctatttcatgtatgtaatatgagaattctgtgatgagacggaaagtggtggcggtgcag------
| | |   |||||||||  |||| || || || || || || || ||| | || || || ||||||||||| |||||||||||||||||||| ||||| ||| |        |||| |  |         ||  ||||||||  |  |  |      ||| | | | |    || | || |  | |     |        
AAGTCCACCTCCAAGTGCGCCACCGTCGGCATCCAGGGCATCGCCTGGTCCTTCGGAGGAATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtcagctctctcccttcttgctgccgtggcttcttctatttccagattccatgggacgaactttttaaatttactgcaattattcgttacacttttggtc

upper sequence: Vv13s0067g00220.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G174807_T01 (Zea mays), 5'ss of exon 1
AGGGCTGACTCCAAGTGTTCCACGGTTGGGATTCAAGGGATTGCTTGGGCTTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtg------atggccttttctcgaaaaaccttttgtctatttcatgtatgtaatatgagaattctgtgatgagacggaaagtggtggcggtgcag---------------------------------------------------------------------------------
| | |   |||||||||  |||| || || || || || || || ||| | || || || ||||||||||| |||||||||||||||||||| ||||| |||       | | |     | ||     |  |||| ||   || | | | |  |        |   ||    | |     ||    ||      |                                                                                 
AAGTCCACCTCCAAGTGCGCCACCGTCGGCATCCAGGGCATCGCCTGGTCCTTCGGCGGCATGATCTTCGCCCTCGTCTACTGCACCGCCGGCATCTCCGgtaccgtacacgccgcccgcccggccgcctctttggcttcgtcctctgtttctttcttcctctgcttgccttgcctcgtcgtttgtgcaaactggtttgctgatgtttctctctctctctctctctctctctctctctctctctctctctctctctctctcttctcgcaactgcag

upper sequence: Vv13s0067g00220.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G174807_T03 (Zea mays), 5'ss of exon 1
AGGGCTGACTCCAAGTGTTCCACGGTTGGGATTCAAGGGATTGCTTGGGCTTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtg------atggccttttctcgaaaaaccttttgtctatttcatgtatgtaatatgagaattctgtgatgagacggaaagtggtggcggtgcag-----
| | |   |||||||||  |||| || || || || || || || ||| | || || || ||||||||||| |||||||||||||||||||| ||||| |||       | | |     | ||     |  |||| ||   || | | | |  |        |   ||    | |     ||    ||      |     
AAGTCCACCTCCAAGTGCGCCACCGTCGGCATCCAGGGCATCGCCTGGTCCTTCGGCGGCATGATCTTCGCCCTCGTCTACTGCACCGCCGGCATCTCCGgtaccgtacacgccgcccgcccggccgcctctttggcttcgtcctctgtttctttcttcctctgcttgccttgcctcgtcgtttgtgcaaactggtttgc

upper sequence: Vv13s0067g00220.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: PP1S305_12V6.1 (Physcomitrella patens), 5'ss of exon 1
AGGGCTGACTCCAAGTGTTCCACGGTTGGGATTCAAGGGATTGCTTGGGCTTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtgatg--------gccttttctcgaaaaaccttttgtctatttcatgtatgtaatatgagaattctg----tgatgagacggaaagtggtggcggtgcag--------------------------------------
|     | |      ||  |   ||| || |||||||| ||||| ||||| || || || ||||| ||| | ||||||||||||||||| ||||| |||||| | |        ||   ||    ||  |          ||    | ||||| || |  |  | | |    |  |        | |||  || |||                                          
AATCGCGGCGATGCCTGCGCGGGGGTCGGCATTCAAGGAATTGCGTGGGCCTTCGGCGGCATGATATTCACCCTCGTCTACTGCACCGCTGGAATTTCAGgtaaagaatgcgctgctcatttcacaagtattgcagaatgatgatgtttatgtgatcttggtttccagatcttcgtagatttttatgtgagggtggtctgatgatgagcttgcccggggtttgatgatgatggcttaag

upper sequence: Vv13s0067g00220.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: PP1S102_107V6.1 (Physcomitrella patens), 5'ss of exon 1
---AGGGCTGACTCCAAGTGTTCCACGGTTGGGATTCAAGGGATTGCTTGGGCTTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgt--gatggccttttctcgaaaa----accttttgtctatttcatgtatgtaatatgagaattctgtgatgagacggaaagtggtggcggtgcag------------------------------
   |   | ||| ||   || |    ||| || |||||||| || || ||||| || ||||| |||||||| || |||||||| ||||| || ||||||||||||   |   |||   ||    |     |  ||||    | ||  || | |||  ||||||| | ||  |    | ||  |     |  |||  ||                              
CGAAACACAGACCCC---TGCTTGGGGGTCGGAATTCAAGGCATCGCCTGGGCGTTCGGTGGAATGATCTTTGCGCTCGTCTATTGCACAGCAGGAATCTCAGgttaaactacctccccttagcagcatgaagttttaaaaaatttctgcaagtatcatgagaagt-tgcaaaaccagggttacattagctggtatagtgatctaacaaggccgttatgtctctacag

upper sequence: Vv13s0067g00220.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: EFJ18960 (Selaginella moellendorffii), 5'ss of exon 1
AGGGCTGACTCCAAGTGTTCCACGGTTGGGATTCAAGGGATTGCTTGGGCTTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgt-----gatggccttttct------cgaaaaaccttttgtct-atttcatgtatgtaatatgagaattctgtgatgagacggaaagtggtggcggtgcag
   | |  | |||  ||       || || || || || || || ||||||||||| || |||||||| ||||||||||||||||| || ||||||||||||     ||||   |||| |       |  |    |  |||   |  | | || |||  |     || | | |   | |  |    || ||  ||   |  
GTCGATCGCACCAGCTGCCTTGGAGTGGGCATCCAGGGCATCGCGTGGGCTTTTGGGGGCATGATCTTTGCTCTCGTCTACTGCACTGCTGGAATCTCAGgtaccaagatgagtttttttgtttcctgtgaggtgtggtgttcgagctaaagtttgttcttgcgaaactttatctcg-ggtgtggtgttgtcccgaaactt

upper sequence: Vv13s0067g00220.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: EFJ11572 (Selaginella moellendorffii), 5'ss of exon 1
AGGGCTGACTCCAAGTGTTCCACGGTTGGGATTCAAGGGATTGCTTGGGCTTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgt-----gatggccttttc-----tcga---aaaaccttttg-------tctatttcatgtatg----taatatgagaattctgtgatgagacgg--aaagtggtggcggtgcag------------------------------------------------------------------------
   | |  | |||  ||       || || || || || || || ||||||||||| || |||||||| ||||||||||||||||| |||||||||||||||     ||||   ||||      ||||   |||   || |        | ||  ||  || ||    |     || | ||  ||| ||     |  |||||   |   || |                                                                          
GTCGATCGCACCAGCTGCCTTGGAGTGGGCATCCAGGGCATCGCGTGGGCTTTTGGAGGCATGATCTTTGCTCTCGTCTACTGCACTGCCGGAATCTCAGgtaccaagatgagttttttggtgttcgagctaaagtgttcttgcgaaactttacctcgggtgtggtgttgtcccgaaactttggtgctgttctagctaaagtttcgcgagttctagtgttccagcgaaagttttcgtgcgagactggaaaccatagctaaaagcttgacatgttttgtttttctcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351019993|gb|FQ439810.1|FQ439810
EST:     TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAG                         GTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
genomic: TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtgatggcct ... ggcggtgcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
EST: gi|161710542|gb|FC060688.1|FC060688
EST:     TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAG                         GTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
genomic: TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtgatggcct ... ggcggtgcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
EST: gi|161717035|gb|FC064675.1|FC064675
EST:     TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAG                         GTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
genomic: TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtgatggcct ... ggcggtgcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
EST: gi|161712606|gb|FC062208.1|FC062208
EST:     TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAG                         GTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
genomic: TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtgatggcct ... ggcggtgcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
EST: gi|161713281|gb|FC063083.1|FC063083
EST:     TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAG                         GTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
genomic: TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtgatggcct ... ggcggtgcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
EST: gi|161715543|gb|FC067110.1|FC067110
EST:     TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAG                         GTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
genomic: TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtgatggcct ... ggcggtgcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
EST: gi|161718563|gb|FC069316.1|FC069316
EST:     TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAG                         GTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
genomic: TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtgatggcct ... ggcggtgcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
EST: gi|110689996|gb|EE066710.1|EE066710
EST:     TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACTGCCGGAATCTCAG                         GTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
genomic: TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtgatggcct ... ggcggtgcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
EST: gi|161714519|gb|FC062969.1|FC062969
EST:     TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAG                         GTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
genomic: TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtgatggcct ... ggcggtgcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
EST: gi|161717605|gb|FC068519.1|FC068519
EST:     TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAG                         GTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
genomic: TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtgatggcct ... ggcggtgcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
EST: gi|161713584|gb|FC063407.1|FC063407
EST:     TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAG                         GTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
genomic: TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtgatggcct ... ggcggtgcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
EST: gi|161716221|gb|FC069499.1|FC069499
EST:     TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAG                         GTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
genomic: TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtgatggcct ... ggcggtgcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
EST: gi|161706222|gb|FC054974.1|FC054974
EST:     TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAG                         GTGGGCATATAAATCCAGCGGTGACCTTTTGGCTGTTCTTGGCAAGGAAGC
genomic: TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtgatggcct ... ggcggtgcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
EST: gi|37185580|gb|CF604933.1|CF604933
EST:     TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACTGCCGGAATCTCAG                         GTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
genomic: TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtgatggcct ... ggcggtgcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
EST: gi|33409723|gb|CF215350.1|CF215350
EST:     TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAG                         GTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
genomic: TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtgatggcct ... ggcggtgcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
EST: gi|161720336|gb|FC071189.1|FC071189
EST:     TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAG                         GTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
genomic: TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtgatggcct ... ggcggtgcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
EST: gi|161719835|gb|FC065771.1|FC065771
EST:     TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAG                         GTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
genomic: TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtgatggcct ... ggcggtgcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
EST: gi|33409719|gb|CF215346.1|CF215346
EST:     TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAG                         GTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
genomic: TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtgatggcct ... ggcggtgcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
EST: gi|161713560|gb|FC062505.1|FC062505
EST:     TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAG                         GTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
genomic: TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtgatggcct ... ggcggtgcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
EST: gi|161719932|gb|FC066129.1|FC066129
EST:     TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAG                         GTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
genomic: TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtgatggcct ... ggcggtgcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
EST: gi|161713874|gb|FC062564.1|FC062564
EST:     TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAG                         GTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
genomic: TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtgatggcct ... ggcggtgcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
EST: gi|161715641|gb|FC067783.1|FC067783
EST:     TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAG                         GTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
genomic: TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtgatggcct ... ggcggtgcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
EST: gi|33409074|gb|CF214701.1|CF214701
EST:     TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAG                         GTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
genomic: TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtgatggcct ... ggcggtgcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
EST: gi|161717612|gb|FC065625.1|FC065625
EST:     TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAG                         GTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
genomic: TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtgatggcct ... ggcggtgcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
EST: gi|161712029|gb|FC060045.1|FC060045
EST:     TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAG                         GTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
genomic: TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtgatggcct ... ggcggtgcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
EST: gi|110732652|gb|EE108136.1|EE108136
EST:     TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACTGCCGGAATCTCAG                         GTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
genomic: TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtgatggcct ... ggcggtgcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGGGCTGACTCCAAGTGTTCCACGGTTGGGATTCAAGGGATTGCTTGGGCTTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtgatggccttttctcgaaaaaccttttgtctatttcatgtatgtaatatgagaattctgtgatgagacggaaagtggtggcggtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG