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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTACGAGAGGATATTTTCCTCCCCATTTTCTCGGCATCCAACCGCCGGAAACCCTAGCAGCAGCAGCGTCGAGCGAAGATGGCGGCCCCCAAGAAAACCgtacggacatcgtattcgttgttccccgatcttattttcaacttctctacgattcaagagatgtaatgcatttcattttgtttgattttgtgttgttttggaaatcacag

Basic information

species Vitis vinifera
transcript Vv13s0064g00850.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|83276983|gb|DV940991.1|DV940991
EST:     AACCTTTGCAGCAGCAGTGTCGAGCGAAGATGGCGGCCCCCAAGAAAACC                         ATGAGGACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGC
genomic: AACCCTAGCAGCAGCAGCGTCGAGCGAAGATGGCGGCCCCCAAGAAAACCgtacggacat ... gaaatcacagAAGAAGACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGC
EST: gi|77588180|gb|DV223301.1|DV223301
EST:     AACCCTAGCAGCAGCAGCGTCGAGCGAAGATGGCGGCCCCCAAGAAAACC                         AAGAAGACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGC
genomic: AACCCTAGCAGCAGCAGCGTCGAGCGAAGATGGCGGCCCCCAAGAAAACCgtacggacat ... gaaatcacagAAGAAGACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGC
EST: gi|71872071|gb|DT021126.1|DT021126
EST:     AACCCTAGCAGCAGCAGCGTCGAGCGAAGATGGCGGCCCCCAAGAAAACC                         AAGAAGACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGC
genomic: AACCCTAGCAGCAGCAGCGTCGAGCGAAGATGGCGGCCCCCAAGAAAACCgtacggacat ... gaaatcacagAAGAAGACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGC
EST: gi|110376398|gb|EC941462.1|EC941462
EST:     AACCCTAGCAGCAGCAGCGTCGAGCGAAGATGGCGGCCCCCAAGAAAACC                         AAGAAGACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGC
genomic: AACCCTAGCAGCAGCAGCGTCGAGCGAAGATGGCGGCCCCCAAGAAAACCgtacggacat ... gaaatcacagAAGAAGACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGC
EST: gi|37187884|gb|CF607235.1|CF607235
EST:     AACCCTAGCAGCAGCAGCGTCGAGCGAAGATGGCGGCCCCCAAGAAAACC                         AAGAAGACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGC
genomic: AACCCTAGCAGCAGCAGCGTCGAGCGAAGATGGCGGCCCCCAAGAAAACCgtacggacat ... gaaatcacagAAGAAGACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGC
EST: gi|71867496|gb|DT016551.1|DT016551
EST:     AACCCTAGCAGCAGCAGCGTCGAGCGAAGATGGCGGCCCCCAAGAAAACC                         AAGAAGACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGC
genomic: AACCCTAGCAGCAGCAGCGTCGAGCGAAGATGGCGGCCCCCAAGAAAACCgtacggacat ... gaaatcacagAAGAAGACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGC
EST: gi|71873230|gb|DT022285.1|DT022285
EST:     AACCCTAGCAGCAGCAGCGTCGAGCGAAGATGGCGGCCCCCAAGAAAACC                         AAGAAGACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGC
genomic: AACCCTAGCAGCAGCAGCGTCGAGCGAAGATGGCGGCCCCCAAGAAAACCgtacggacat ... gaaatcacagAAGAAGACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGC
EST: gi|110733216|gb|EE109213.1|EE109213
EST:     AACCCTAGCAGCAGCAGCGTCGAGCGAAGATGGCGGCCCCCAAGAAAACC                         AAGAAGACTCAGGAAAACATCAACAACAAGCTTGCTCTCGTGATGAAGAGC
genomic: AACCCTAGCAGCAGCAGCGTCGAGCGAAGATGGCGGCCCCCAAGAAAACCgtacggacat ... gaaatcacagAAGAAGACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGC
EST: gi|87585575|gb|DY474236.1|DY474236
EST:     AACCCTAGCAGCAGCAGCGTCGAGCGAAGATGGCGGCCCCCAAGAAAACC                         AAGAAGACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGC
genomic: AACCCTAGCAGCAGCAGCGTCGAGCGAAGATGGCGGCCCCCAAGAAAACCgtacggacat ... gaaatcacagAAGAAGACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGC
EST: gi|110366148|gb|EC929857.1|EC929857
EST:     AACCCTAGCAGCAGCAGCGTCGAGCGAAGATGGCGGCCCCCAAGAAAACC                         AAGAAGACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGC
genomic: AACCCTAGCAGCAGCAGCGTCGAGCGAAGATGGCGGCCCCCAAGAAAACCgtacggacat ... gaaatcacagAAGAAGACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGC
EST: gi|77579663|gb|DV218684.1|DV218684
EST:     AACCCTAGCAGCAGCAGCGTCGAGCGAAGATGGCGGCCCCCAAGAAAACC                         AAGAAGACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGC
genomic: AACCCTAGCAGCAGCAGCGTCGAGCGAAGATGGCGGCCCCCAAGAAAACCgtacggacat ... gaaatcacagAAGAAGACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGC
EST: gi|77577312|gb|DV217370.1|DV217370
EST:     AACCCTAGCAGCAGCAGCGTCGAGCGAAGATGGCGGCCCCCAAGAAAACC                         AAGAAGACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGC
genomic: AACCCTAGCAGCAGCAGCGTCGAGCGAAGATGGCGGCCCCCAAGAAAACCgtacggacat ... gaaatcacagAAGAAGACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGC
EST: gi|110378405|gb|EC943536.1|EC943536
EST:     AACCCTAGCAGCAGCAGCGTCGAGCGAAGATGGCGGCCCCCAAGAAAACC                         AAGAAGACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGC
genomic: AACCCTAGCAGCAGCAGCGTCGAGCGAAGATGGCGGCCCCCAAGAAAACCgtacggacat ... gaaatcacagAAGAAGACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGC
EST: gi|71866692|gb|DT015747.1|DT015747
EST:     AACCCTAGCAGCAGCAGCGTCGAGCGAAGATGGCGGCCCCCAAGAAAACC                         AAGAAGACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGC
genomic: AACCCTAGCAGCAGCAGCGTCGAGCGAAGATGGCGGCCCCCAAGAAAACCgtacggacat ... gaaatcacagAAGAAGACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGTACGAGAGGATATTTTCCTCCCCATTTTCTCGGCATCCAACCGCCGGAAACCCTAGCAGCAGCAGCGTCGAGCGAAGATGGCGGCCCCCAAGAAAACCgtacggacatcgtattcgttgttccccgatcttattttcaacttctctacgattcaagagatgtaatgcatttcattttgtttgattttgtgttgttttggaaatcacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA