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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTAGTGGAGTTGTTCAAAGTGTCTCTCCTACAATGAGGATACGAAGGAAGAATAACAATGAGATTGTTCCTAAGCGTGATATTACTATTGCGGACAAGACgtgagtgtatattttattttttgcactggtcactttggtctaatgttgcttcatattgaacttatggacgtttcaattgtag

Basic information

species Vitis vinifera
transcript Vv13s0047g00870.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0047g00870.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA05G00370.2 (Glycine max), 5'ss of exon 6
TTAGTGGAGTTGTTCAAAGTGTCTCTCCTACAATGAGGATACGAAGGAAGAATAACAATGAGATTGTTCCTAAGCGTGATATTACTATTGCGGACAAGACgtgagtgtatatt--ttattttttgcactggtca--ctttggtctaatgttgcttcatattgaacttatggacgtt-tcaattgtag-------------
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TTATTGGAGTTGTTAAGAATGTGTCTTCAACAATGAGCATTCGTAGGAAGAGTGACAATGAGAGTATTCCAAAGCGTGACATTACTATTGCTGATGACACgtgagtatttgccacttctcacatacaatgtctagctttttttttaaaaaaatattattgtgaattggggaatgttgttaagagtgatttgtaaacagta