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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTGGTACTACCTCAAGCGCAAGGTCTGTGGCAAGCTCTTCCGATTCGACACAATCTCCGAAATCGACATCTACAAGTCCGAGCCTTGGGACCTCCCAGgtttgtctctcttattctgatgaatttcttgatatcacgtcttttcccctgtcttttatctttctgaatctttagcttttcttctaggtccggccgccagagctttcttcctaaattgattttggtctttgaattctggtatttttttgggtggtgttttag

Basic information

species Vitis vinifera
transcript Vv13s0019g05240.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110687443|gb|EE064856.1|EE064856
EST:     CACAATCTCCGAAATCGACATCTACAAGTCCGAGCCTTGGGACCTCCCAG                         GTCAGTCCAAGCTGAAGAGTAGGGACCTGGAATGGTATTTCTTCAGTGTGC
genomic: CACAATCTCCGAAATCGACATCTACAAGTCCGAGCCTTGGGACCTCCCAGgtttgtctct ... ggtgttttagGTCAGTCCAAGCTGAAGAGTAGGGACCTGGAATGGTATTTCTTCAGTGTGC
EST: gi|71858530|gb|DT007585.1|DT007585
EST:     CACAATCTCCGAAATCGACATCTACAAGTCCGAGCCTTGGGACCTCCCAG                         GTCAGTCCAAGCTGAAGAGTAGGGACCTGGAATGGTATTTCTTCAGTGTGC
genomic: CACAATCTCCGAAATCGACATCTACAAGTCCGAGCCTTGGGACCTCCCAGgtttgtctct ... ggtgttttagGTCAGTCCAAGCTGAAGAGTAGGGACCTGGAATGGTATTTCTTCAGTGTGC
EST: gi|71857288|gb|DT006343.1|DT006343
EST:     CACAATCTCCGAAATCGACATCTACAAGTCCGAGCCTTGGGACCTCCCAG                         GTCAGTCCAAGCTGAAGAGTAGGGACCTGGAATGGTATTTCTTCAGTGTGC
genomic: CACAATCTCCGAAATCGACATCTACAAGTCCGAGCCTTGGGACCTCCCAGgtttgtctct ... ggtgttttagGTCAGTCCAAGCTGAAGAGTAGGGACCTGGAATGGTATTTCTTCAGTGTGC
EST: gi|161718084|gb|FC067601.1|FC067601
EST:     CACAATCTCCGAAATCGACATCTACAAGTCCGAGCCTTGGGACCTCCCAG                         GTCAGTCCAAGCTGAAGAGTAGGGACCTGGAATGGTATTTCTTCAGTGTGC
genomic: CACAATCTCCGAAATCGACATCTACAAGTCCGAGCCTTGGGACCTCCCAGgtttgtctct ... ggtgttttagGTCAGTCCAAGCTGAAGAGTAGGGACCTGGAATGGTATTTCTTCAGTGTGC
EST: gi|71861516|gb|DT010571.1|DT010571
EST:     CACAATCTCCGAAATCGACATCTACAAGTCCGAGCCTTGGGACCTCCCAG                         GTCAGTCCAAGCTGAAGAGTAGGGACCTGGAATGGTATTTCTTCAGTGTGC
genomic: CACAATCTCCGAAATCGACATCTACAAGTCCGAGCCTTGGGACCTCCCAGgtttgtctct ... ggtgttttagGTCAGTCCAAGCTGAAGAGTAGGGACCTGGAATGGTATTTCTTCAGTGTGC
EST: gi|294966128|gb|GW837495.1|GW837495
EST:     CACAATCTCCGAAATCGACATCTACAAGTCCGAGCCTTGGGACCTCCCAG                         GTCAGTCCAAGCTGAAGAGTAGGGACCTGGAATGGTATTTCTTCAGTGTGC
genomic: CACAATCTCCGAAATCGACATCTACAAGTCCGAGCCTTGGGACCTCCCAGgtttgtctct ... ggtgttttagGTCAGTCCAAGCTGAAGAGTAGGGACCTGGAATGGTATTTCTTCAGTGTGC
EST: gi|71870084|gb|DT019139.1|DT019139
EST:     CACAATCTCCGAAATCGACATCTACAAGTCCGAGCCTTGGGACCTCCCAG                         GTCAGTCCAAGCTGAAGAGTAGGGACCTGGAATGGTATTTCTTCAGTGTGC
genomic: CACAATCTCCGAAATCGACATCTACAAGTCCGAGCCTTGGGACCTCCCAGgtttgtctct ... ggtgttttagGTCAGTCCAAGCTGAAGAGTAGGGACCTGGAATGGTATTTCTTCAGTGTGC
EST: gi|161720867|gb|FC070982.1|FC070982
EST:     CACAATCTCCGAAATCGACATCTACAAGTCCGAGCCTTGGGACCTCCCAG                         TTCAGTCCAAGCTGAAGAGTAGGGACCTGGAATGGTATTTCTTCAGTGTGC
genomic: CACAATCTCCGAAATCGACATCTACAAGTCCGAGCCTTGGGACCTCCCAGgtttgtctct ... ggtgttttagGTCAGTCCAAGCTGAAGAGTAGGGACCTGGAATGGTATTTCTTCAGTGTGC