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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTCTTGGATCTCTTCAATGGCTTACGAAGGAATCCTCCTGGGCATGGGCAACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgtaactctactctcctttgttctgcggttcgtcgtcctctgcttttcaaatgctgcgttttgattctgtttttgttcttggatccgttcttatggttgtg...

Basic information

species Vitis vinifera
transcript Vv13s0019g04480.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g04480.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os04g43750.1 (Oryza sativa), 5'ss of exon 1
CCTCTTGGATCTCTTCAATGGCTTACGAAGGAATCCTCCTGGGCATGGGCAACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgta-actctactctcctttgttctgcggttcgtcgtcctctgcttttcaaatgctgcgttttgattctgtttttgttcttggatccgttcttatggttgtg-
      ||||             ||||| ||  |||||||||||||||| ||||||||||||||||| ||  | ||||||||||| |  |||||   || |||    | || |              ||  |  ||  |     | || | |    | | | |  |||||  |  |    |  |    |||| ||    |  
AGGGAAGGATGGAGAGCGGAAGCTACGAGGGCGTCCTCCTGGGCATGGGAAACCCCCTCCTCGACATCTCCGCCGTCGTCGACGAGGCCTTCCTCGCAAAgtatgaaccaccccaacagccctcttcgtgtgctgtaatg-atctctcgattaaaacctatggtctctgtagtc-tgtaagactgtactcttctgccaattt

upper sequence: Vv13s0019g04480.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os02g41590.1 (Oryza sativa), 5'ss of exon 1
CCTCTTGGATCTCTTCAATGGCTTACGAAGGAATCCTCCTGGGCATGGGCAACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgtaactctactctcctttgttctgcggttcgtcgtcctctgct-tttcaaatgctgcgttttgattctgtttttgttcttggatccgttcttatggttgtg
      |  |      |||||| | ||| ||  | |||||||| ||||||||||||||||||||||| ||  | ||||||||||| |  |||||    | |||      | ||| | |  ||   | | | | |||||   ||    |  || |    ||||  ||    ||||  | |||  | ||||   ||     ||
AGCGGAGAGTAGAGGGAATGGCGTCCGAGGGCGTGCTCCTGGGGATGGGCAACCCCCTCCTCGACATCTCCGCCGTCGTCGACGACGCCTTCCTCACCAAgtacgcgcgcgctcgtctcctcc-tgctccttagtcctgatctaccgctgatcccttttttttttttgccttttcgttttgcgttcgtttggatccgaatg

upper sequence: Vv13s0019g04480.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G003775_T01 (Zea mays), 5'ss of exon 1
CCTCTTGGATCTCTTCAATGGC--TTACGAAGGAATCCTCCTGGGCATGGGCAACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgtaactctactctcctttgttctgcggttcgtcgtc-ctctgcttttcaaatgctgcgttttgattctgtttttgttcttggatccgttcttatggttgtg----
      |||  |   ||   ||   |||||||| ||||||||||| ||||| ||||||||||||||||| ||  ||||||||||||| |  |||||    | ||| ||| | ||  | | | ||  ||  || |  || |||  ||   |  ||  |   |||  |     |||  || | |   |  |    |   ||  ||    
--AGGAGGAAATGGCCAGCAGCGGCTACGAAGGGATCCTCCTGGGAATGGGGAACCCCCTCCTCGACATCTCCGCTGTCGTCGACGAGGGCTTCCTCGCCAAgta-ctcgattcctcctcgatc-acgtctcatgatctctcaactacgcctatattttttttctaac---tttcagtacgtaattttgccagtggtgtgatgcgga

upper sequence: Vv13s0019g04480.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G135132_T01 (Zea mays), 5'ss of exon 1
CCTCTTGGATCTCTTCAATGGCTTACGAAGGAATCCTCCTGGGCATGGGCAACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgtaactctactctcctttgttctgcggttcgtcgtcctctgcttttca-aatgctgcgttttgattctgtttttgttcttggatccgttcttatggttgtg--
      |            |||   ||| ||  | |||||||| ||||||||||||||||||||||| ||  | || ||||| || |  |||||   || |||| ||     ||  |       |   ||    |  |||| || |   |||    | |  |  |  || | | |||  |     || | ||  ||    |  
AGAGAAGAGAGGAAATGGCGGCGAGCGAGGGCGTGCTCCTGGGGATGGGCAACCCCCTCCTCGACATCTCCGCCGTTGTCGATGACGCCTTCCTGGCAAAgtaagtcggtcgtctctcacctctc---tcactctgatctgtttataggaattactcctagtcgtagtggtctggttgctttcggcggttttgcggcctagtc

upper sequence: Vv13s0019g04480.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G540538_T02 (Zea mays), 5'ss of exon 1
CCTCTTGGATCTCTTCAATGGCTTACGAAGGAATCCTCCTGGGCATGGGCAACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgtaactctactctcctttgttctgcggttcgtcgtcctctgcttttcaaatgctgcgttttgattctgtttttgttcttggatccgttcttatggttgtg
      |            |||   ||| ||  | |||||||| ||||||||||||||||||||||| ||  | |||||||| || |  |||||   || ||||     |   || | |  ||   ||   |  ||   |  |    |     |   |  |  |  |  | || |  |||  | || |  | | | | ||
GGAGAAGAGAGGAAATGGCGGCGACCGAGGGCGTGCTCCTGGGGATGGGCAACCCCCTCCTCGACATCTCCGCCGTCGTCGATGACGCCTTCCTGACAAAgtaagcggtcgtaccctcgccctctcgtgtctgatctgtttataggaattgagttactcctagtcgtagtgttttggttgctttcggtggttttgctatg

upper sequence: Vv13s0019g04480.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA10G06580.1 (Glycine max), 5'ss of exon 1
CCTCTTGGATCTCTTCAATGGCTTACGAAGGAATCCTCCTGGGCATGGGCAACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgtaactctactctcc-----tttgttctgcggttcgtcgtcctctgcttttcaaatgctgcgttttgattctgtttttgttcttggatccgttcttatggttgtg
|||  |   || | |||||||  |  || ||  | ||||| |||||| ||||||| ||||||||||| ||| | ||||||||||| |  ||| | |||| |||   | ||| ||      ||   |||     ||    || | |  || |  |       || |||| | | ||  | || |  | |  |  || |||      
CCTTCTTCCTCGCATCAATGGAGTTGGACGGCGTTCTCCTCGGCATGTGCAACCCTCTCCTCGACATCTCTGCCGTCGTCGACGACGCTTTCTTGCAAAAgtattaccactatctcacatttctctctctctctctctttcttttatttattgataataatgtgttgaatatattactattatgagcttagaact-atgaa----

upper sequence: Vv13s0019g04480.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA13G20780.1 (Glycine max), 5'ss of exon 1
CCTCTTGGATCTCTTCAATGGCTTACGAAGGAATCCTCCTGGGCATGGGCAACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgtaactctactctcctttgttctgcggttcgtcgtcctctgcttttcaaatgctgcgttttgattctgtttttgttcttggatccgttcttatggttgtg---
|||  |  | | | |||||||  |  || ||  | ||||| |||||| ||||||| ||||||||||| ||| | ||||||||||| |  ||| | |||| |||   || |    | || || | |  |   || |    | || ||  | |  |   | || ||  |||  |   | |||  |    | |||   || ||   
CCTTCTTCACCGCATCAATGGAGTTGGACGGCGTTCTCCTCGGCATGTGCAACCCTCTCCTCGACATCTCTGCCGTCGTCGACGACGCTTTCTTGCAAAAgtattactgcctcacattttttt-ctctctttcttttgttactatt--attaattattcttaataatgtcatgagtattgagtagtatattactattttgagc

upper sequence: Vv13s0019g04480.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA19G36630.1 (Glycine max), 5'ss of exon 1
CCTCTTGGATCTCTTCAATGGCTTACGAAGGAATCCTCCTGGGCATGGGCAACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgtaactctactctc-ctttgttctgcggttcgtcgtcctctgcttttcaaat-gctgcgttttgattctgttt-ttgttcttggatccgttcttatggttgtg--------------------------------------------
    |  ||||    ||||||  | |||||| |  |||||||||||||| ||||| ||||||||||| ||  | |||||||| ||||| ||| |  ||| ||| | |  | ||| ||||  | | |    |||  | |||   | | |   | | | ||||    |   |      ||||           |  | || |                                               
TTGATCAGATCATAACAATGGTGTCCGAAGGCACTCTCCTGGGCATGGGTAACCCTCTCCTCGACATCTCCGCCGTCGTCGATGAAGACTTCTTAAAAAAgtatcaccgcactctctttaatttccatgccgttttgctccattctcctcgtcgtttcgttactttagagaacaccgttccgtagcttcaccggacggataaactacgtcgtttatcgttctgaatgatttttgtgtgttgtgacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30137599|gb|CB922937.1|CB922937
EST:     AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAG                         ATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
genomic: AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgtaactctac ... atgttaacagATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
EST: gi|71864075|gb|DT013130.1|DT013130
EST:     AACCCCCTCCTCGACATTTCTTCCGTCGTCGACGAAGAATTCCTTCAAAA                         ATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
genomic: AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgtaactctac ... atgttaacagATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
EST: gi|110687648|gb|EE065296.1|EE065296
EST:     AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAG                         ATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
genomic: AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgtaactctac ... atgttaacagATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
EST: gi|71863003|gb|DT012058.1|DT012058
EST:     AACCCCCTCCTCGACATTTCTTCCGTCGTCGACGAAGAATTCCTTCAAAA                         ATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
genomic: AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgtaactctac ... atgttaacagATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
EST: gi|110728204|gb|EE103570.1|EE103570
EST:     AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAA                         ATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
genomic: AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgtaactctac ... atgttaacagATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
EST: gi|351023138|gb|FQ432521.1|FQ432521
EST:     AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAG                         ATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
genomic: AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgtaactctac ... atgttaacagATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
EST: gi|351023529|gb|FQ432912.1|FQ432912
EST:     AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAG                         ATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
genomic: AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgtaactctac ... atgttaacagATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
EST: gi|351038074|gb|FQ460816.1|FQ460816
EST:     AACCCCCTCCTCGACATTTCTTCCGTCGTCGACGAAGAATTCCTTCAAAG                         ATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
genomic: AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgtaactctac ... atgttaacagATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
EST: gi|352794243|gb|FQ479485.1|FQ479485
EST:     AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAG                         ATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
genomic: AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgtaactctac ... atgttaacagATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
EST: gi|71860280|gb|DT009335.1|DT009335
EST:     AACCCCCTCCTCGACATTTCTTCCGTCGTCGACGAAGAATTCCTTCAAAA                         ATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
genomic: AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgtaactctac ... atgttaacagATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
EST: gi|30132011|gb|CB917350.1|CB917350
EST:     AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAG                         ATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
genomic: AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgtaactctac ... atgttaacagATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
EST: gi|71861873|gb|DT010928.1|DT010928
EST:     AACCCCCTCCTCGACATTTCTTCCGTCGTCGACGAAGAATTCCTTCAAAA                         ATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
genomic: AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgtaactctac ... atgttaacagATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
EST: gi|161716356|gb|FC066867.1|FC066867
EST:     AACCCCCTGCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAA                         ATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
genomic: AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgtaactctac ... atgttaacagATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
EST: gi|352786945|gb|FQ475978.1|FQ475978
EST:     AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAG                         ATATGACATCAAGTTGAATAATACTATTCTTGCTGAGGACAAACACTTGCC
genomic: AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgtaactctac ... atgttaacagATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
EST: gi|110693709|gb|EE070177.1|EE070177
EST:     AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAG                         ATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
genomic: AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgtaactctac ... atgttaacagATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
EST: gi|349824265|gb|FQ417652.1|FQ417652
EST:     AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAA                         ATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
genomic: AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgtaactctac ... atgttaacagATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
EST: gi|352794240|gb|FQ479482.1|FQ479482
EST:     AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAG                         ATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
genomic: AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgtaactctac ... atgttaacagATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
EST: gi|110391898|gb|EC956929.1|EC956929
EST:     AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAG                         ATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
genomic: AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgtaactctac ... atgttaacagATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
EST: gi|71859146|gb|DT008201.1|DT008201
EST:     AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAG                         ATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
genomic: AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgtaactctac ... atgttaacagATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
EST: gi|351028349|gb|FQ427245.1|FQ427245
EST:     AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAG                         ATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
genomic: AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgtaactctac ... atgttaacagATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
EST: gi|110708040|gb|EE085129.1|EE085129
EST:     AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAA                         ATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
genomic: AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgtaactctac ... atgttaacagATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
EST: gi|71860232|gb|DT009287.1|DT009287
EST:     AACCCCCTCCTCGACATTTCTTCCGTCGTCGACGAAGAATTCCTTCAAAA                         ATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
genomic: AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgtaactctac ... atgttaacagATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
EST: gi|71865109|gb|DT014164.1|DT014164
EST:     AACCCCCTCCTCGACATTTCTTCCGTCGTCGACGAAGAATTCCTTCAAAA                         ATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
genomic: AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgtaactctac ... atgttaacagATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
EST: gi|71864474|gb|DT013529.1|DT013529
EST:     AACCCCCTCCTCGACATTTCTTCCGTCGTCGACGAAGAATTCCTTCAAAA                         ATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
genomic: AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgtaactctac ... atgttaacagATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
EST: gi|351013485|gb|FQ425516.1|FQ425516
EST:     AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAG                         ATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
genomic: AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgtaactctac ... atgttaacagATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
EST: gi|110703696|gb|EE080770.1|EE080770
EST:     AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAA                         ATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
genomic: AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgtaactctac ... atgttaacagATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
EST: gi|71863288|gb|DT012343.1|DT012343
EST:     AACCCCCTCCTCGACATTTCTTCCGTCGTCGACGAAGAATTCCTTCAAAA                         ATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
genomic: AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgtaactctac ... atgttaacagATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
EST: gi|351026422|gb|FQ428434.1|FQ428434
EST:     AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAG                         ATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
genomic: AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgtaactctac ... atgttaacagATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
EST: gi|110689258|gb|EE065335.1|EE065335
EST:     AACCCCCTGCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAA                         ATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
genomic: AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgtaactctac ... atgttaacagATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
EST: gi|352786996|gb|FQ476029.1|FQ476029
EST:     AACCCCCTCCTCGACATTTCTTCCGTCGTCGACGAAGAATTCCTTCAAAG                         ATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
genomic: AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgtaactctac ... atgttaacagATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
EST: gi|161712338|gb|FC061663.1|FC061663
EST:     AACCCCCTGCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAA                         ATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
genomic: AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgtaactctac ... atgttaacagATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
EST: gi|71862297|gb|DT011352.1|DT011352
EST:     AACCCCCTCCTCGACATTTCTTCCGTCGTCGACGAAGAATTCCTTCAAAA                         ATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
genomic: AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgtaactctac ... atgttaacagATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
EST: gi|30125628|gb|CB910967.1|CB910967
EST:     AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAG                         ATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
genomic: AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgtaactctac ... atgttaacagATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
EST: gi|351038237|gb|FQ460929.1|FQ460929
EST:     AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAG                         ATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
genomic: AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgtaactctac ... atgttaacagATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
EST: gi|352786981|gb|FQ476014.1|FQ476014
EST:     AACCCCCTCCTCGACATTTCTTCTGTCCTCGACGAAGAATTCCTTCCAAG                         ATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
genomic: AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgtaactctac ... atgttaacagATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
EST: gi|110685346|gb|EE063661.1|EE063661
EST:     AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAG                         ATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
genomic: AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgtaactctac ... atgttaacagATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
EST: gi|352790622|gb|FQ475380.1|FQ475380
EST:     AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAG                         ATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
genomic: AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgtaactctac ... atgttaacagATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
EST: gi|71860319|gb|DT009374.1|DT009374
EST:     AACCCCCTCCTCGACATTTCTTCCGTCGTCGACGAAGAATTCCTTCAAAA                         ATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
genomic: AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgtaactctac ... atgttaacagATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
EST: gi|71864456|gb|DT013511.1|DT013511
EST:     AACCCCCTCCTCGACATTTCTTCCGTCGTCGACGAAGAATTCCTTCAAAA                         ATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
genomic: AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgtaactctac ... atgttaacagATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
EST: gi|110685881|gb|EE062990.1|EE062990
EST:     AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAG                         ATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
genomic: AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgtaactctac ... atgttaacagATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
EST: gi|71862322|gb|DT011377.1|DT011377
EST:     AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAG                         ATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
genomic: AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgtaactctac ... atgttaacagATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
EST: gi|30129600|gb|CB914939.1|CB914939
EST:     AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAG                         ATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
genomic: AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgtaactctac ... atgttaacagATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
EST: gi|71855237|gb|DT004292.1|DT004292
EST:     AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAA                         ATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
genomic: AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgtaactctac ... atgttaacagATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
EST: gi|110726165|gb|EE101710.1|EE101710
EST:     AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAA                         ATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
genomic: AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgtaactctac ... atgttaacagATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
EST: gi|110715240|gb|EE093065.1|EE093065
EST:     AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAA                         ATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
genomic: AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgtaactctac ... atgttaacagATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
EST: gi|30129081|gb|CB914420.1|CB914420
EST:     AACCCCCTGCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAA                         ATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
genomic: AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgtaactctac ... atgttaacagATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
EST: gi|71864037|gb|DT013092.1|DT013092
EST:     AACCCCCTCCTCGACATTTCTTCCGTCGTCGACGAAGAATTCCTTCAAAA                         ATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
genomic: AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgtaactctac ... atgttaacagATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
EST: gi|46917497|gb|CN546826.1|CN546826
EST:     AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAG                         ATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
genomic: AACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgtaactctac ... atgttaacagATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCTCTTGGATCTCTTCAATGGCTTACGAAGGAATCCTCCTGGGCATGGGCAACCCCCTCCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAGgtaactctactctcctttgttctgcggttcgtcgtcctctgcttttcaaatgctgcgttttgattctgtttttgttcttggatccgttcttatggttgtg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctcct