Sequence
atgc intronic sequence ATGC exonic sequenceCCTCTTGGATCTCTTCAATGGCTTACGAAGGAATCCTCCTGGGCATGGGCAACCCCCTGCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAAgtaactctactctcctttgttatgcggttcattctcctctgcttttcaaatgctgcgttttgattctgtttttgttcttggatccgttcttatcgttgtg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g04470.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os04g43750.1 (Oryza sativa), 5'ss of exon 1
CCTCTTGGATCTCTTCAATGGCTTACGAAGGAATCCTCCTGGGCATGGGCAACCCCCTGCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAAgta------actctactctcctttgttatgcggttcattctcctctgcttttcaaatgctgcgttttgattctgtttttgttcttggatccgttcttatcgttgtg
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AGGGAAGGATGGAGAGCGGAAGCTACGAGGGCGTCCTCCTGGGCATGGGAAACCCCCTCCTCGACATCTCCGCCGTCGTCGACGAGGCCTTCCTCGCAAAgtatgaaccaccccaacagccctcttcgtgtgctgtaatgatctctcgatt--aaaacctatggtctc-tgtagtctgtaagactgtactc--ttctgccaattt-
upper sequence: Vv13s0019g04470.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os02g41590.1 (Oryza sativa), 5'ss of exon 1
CCTCTTGGATCTCTTCAATGGCTTACGAAGGAATCCTCCTGGGCATGGGCAACCCCCTGCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAAgtaactctactctcctttgtta-tgcggttca-ttctcctctgcttttcaaatgctgcgttttgattctgtttttgttcttggatccgttcttatcgttgtg
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AGCGGAGAGTAGAGGGAATGGCGTCCGAGGGCGTGCTCCTGGGGATGGGCAACCCCCTCCTCGACATCTCCGCCGTCGTCGACGACGCCTTCCTCACCAAgtacgcgcgcgctcgtctcctcctgctccttagtcctgatctaccgct--gatcccttttttttttttgccttttcgttttgcgttcgtttggatccgaatg
upper sequence: Vv13s0019g04470.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G003775_T01 (Zea mays), 5'ss of exon 1
CCTCTTGGATCTCTTCAATGGC--TTACGAAGGAATCCTCCTGGGCATGGGCAACCCCCTGCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAAgtaactctactctcctttgttatgcggttcattctc-ctctgcttttcaaatgctgcgttttgattctgtttttgttcttggatccgttcttatcgttgtg----
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--AGGAGGAAATGGCCAGCAGCGGCTACGAAGGGATCCTCCTGGGAATGGGGAACCCCCTCCTCGACATCTCCGCTGTCGTCGACGAGGGCTTCCTCGCCAAgta-ctcgattcctcctcgat-cacgtctcatgatctctcaactacgcctatattttttttctaac---tttcagtacgtaattttgccagtggtgtgatgcggaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|27583339|gb|CB006034.1|CB006034EST: AACCCCCTGCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAA ATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
genomic: AACCCCCTGCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAAgtaactctac ... gtgttaacagATATGACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCTCTTGGATCTCTTCAATGGCTTACGAAGGAATCCTCCTGGGCATGGGCAACCCCCTGCTCGACATTTCTTCTGTCGTCGACGAAGAATTCCTTCAAAAgtaactctactctcctttgttatgcggttcattctcctctgcttttcaaatgctgcgttttgattctgtttttgttcttggatccgttcttatcgttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcctct