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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACTTCCCGTCATTATTTTCCGTCCTATCAGTGCTTGTTCCTTCTGGGCATATTTCTCTTTACCCCAACTCATTGAAGCTGGCGAAGTCCCTTTCAGAGgttcactttctgatttggattccattagaaacgctctttatcttcgtttctttttcttttttcccttctttctcttattttttttcccctggttaattacaaactggctagattatgactaatctccag

Basic information

species Vitis vinifera
transcript Vv13s0019g03060.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161717803|gb|FC064734.1|FC064734
EST:     ATATTTCTCTTTACCCCAACTCATTGAAGCTGGCGAAGTCCCTTTCAGAG                         GTGGTGATATGGATCGGCTGGTAGCCAGTGTGCCTGGCATGGAAGGCTTTC
genomic: ATATTTCTCTTTACCCCAACTCATTGAAGCTGGCGAAGTCCCTTTCAGAGgttcactttc ... taatctccagGTGGTGATATGGATCGGCTGGTAGCCAGTGTGCCTGGCATGGAAGGCTTTC
EST: gi|161720615|gb|FC070225.1|FC070225
EST:     ATATTTCTCTTTACCCCAACTCATTGAAGCTGGCGAAGTCCCTTTCAGAG                         GTGGTGATATGGATCGGCTGGTAGCCAGTGTGCCTGGCATGGAAGGCTTTC
genomic: ATATTTCTCTTTACCCCAACTCATTGAAGCTGGCGAAGTCCCTTTCAGAGgttcactttc ... taatctccagGTGGTGATATGGATCGGCTGGTAGCCAGTGTGCCTGGCATGGAAGGCTTTC
EST: gi|161712167|gb|FC061539.1|FC061539
EST:     ATATTTCTCTTTACCCCAACTCATTGAAGCTGGCGAAATCCCTTTCAGAG                         GTGGTGATATGGATCGGCTGGTAGCCAGTGTGCCTGGCATGGAAGG
genomic: ATATTTCTCTTTACCCCAACTCATTGAAGCTGGCGAAGTCCCTTTCAGAGgttcactttc ... taatctccagGTGGTGATATGGATCGGCTGGTAGCCAGTGTGCCTGGCATGGAAGG
EST: gi|161713679|gb|FC062819.1|FC062819
EST:     ATATTTCTCTTTACCCCAACTCATTGAAGCTGGCGAAGTCCCTTTCAGAG                         GTGGTGATATGGATCGGCTGGTAGCCAGTGTGCCTGGCATGGAAGGCTTTC
genomic: ATATTTCTCTTTACCCCAACTCATTGAAGCTGGCGAAGTCCCTTTCAGAGgttcactttc ... taatctccagGTGGTGATATGGATCGGCTGGTAGCCAGTGTGCCTGGCATGGAAGGCTTTC
EST: gi|161712054|gb|FC061426.1|FC061426
EST:     ATATTTCTCTTTACCCCAACTCATTGAAGCTGGCGAAGTCCCTTTCAGAG                         GTGGTGATATGGATCGGCTGGTA
genomic: ATATTTCTCTTTACCCCAACTCATTGAAGCTGGCGAAGTCCCTTTCAGAGgttcactttc ... taatctccagGTGGTGATATGGATCGGCTGGTA
EST: gi|161712867|gb|FC062042.1|FC062042
EST:     ATATTTCTCTTTACCCCATCTCATTGAAGCTGGCGAAGTCCCTTTCAGAG                         GTGGTGATATGGATCGGCTGGTAGCCAGTGTGCCTGGCATGGAAGGCTTTC
genomic: ATATTTCTCTTTACCCCAACTCATTGAAGCTGGCGAAGTCCCTTTCAGAGgttcactttc ... taatctccagGTGGTGATATGGATCGGCTGGTAGCCAGTGTGCCTGGCATGGAAGGCTTTC
EST: gi|161715284|gb|FC064591.1|FC064591
EST:     ATATTTCTCTTTACCCCAACTCATTGAAGCTGGCGAAGTCCCTTTCAGAG                         GTGGTGATATGGATCGGCTGGTAGCCAGTGTGCCTGGCATGGAAGGCTTTC
genomic: ATATTTCTCTTTACCCCAACTCATTGAAGCTGGCGAAGTCCCTTTCAGAGgttcactttc ... taatctccagGTGGTGATATGGATCGGCTGGTAGCCAGTGTGCCTGGCATGGAAGGCTTTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGACTTCCCGTCATTATTTTCCGTCCTATCAGTGCTTGTTCCTTCTGGGCATATTTCTCTTTACCCCAACTCATTGAAGCTGGCGAAGTCCCTTTCAGAGgttcactttctgatttggattccattagaaacgctctttatcttcgtttctttttcttttttcccttctttctcttattttttttcccctggttaattacaaactggctagattatgactaatctccag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG