Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161717803|gb|FC064734.1|FC064734EST: ATATTTCTCTTTACCCCAACTCATTGAAGCTGGCGAAGTCCCTTTCAGAG GTGGTGATATGGATCGGCTGGTAGCCAGTGTGCCTGGCATGGAAGGCTTTC
genomic: ATATTTCTCTTTACCCCAACTCATTGAAGCTGGCGAAGTCCCTTTCAGAGgttcactttc ... taatctccagGTGGTGATATGGATCGGCTGGTAGCCAGTGTGCCTGGCATGGAAGGCTTTC
EST:
gi|161720615|gb|FC070225.1|FC070225EST: ATATTTCTCTTTACCCCAACTCATTGAAGCTGGCGAAGTCCCTTTCAGAG GTGGTGATATGGATCGGCTGGTAGCCAGTGTGCCTGGCATGGAAGGCTTTC
genomic: ATATTTCTCTTTACCCCAACTCATTGAAGCTGGCGAAGTCCCTTTCAGAGgttcactttc ... taatctccagGTGGTGATATGGATCGGCTGGTAGCCAGTGTGCCTGGCATGGAAGGCTTTC
EST:
gi|161712167|gb|FC061539.1|FC061539EST: ATATTTCTCTTTACCCCAACTCATTGAAGCTGGCGAAATCCCTTTCAGAG GTGGTGATATGGATCGGCTGGTAGCCAGTGTGCCTGGCATGGAAGG
genomic: ATATTTCTCTTTACCCCAACTCATTGAAGCTGGCGAAGTCCCTTTCAGAGgttcactttc ... taatctccagGTGGTGATATGGATCGGCTGGTAGCCAGTGTGCCTGGCATGGAAGG
EST:
gi|161713679|gb|FC062819.1|FC062819EST: ATATTTCTCTTTACCCCAACTCATTGAAGCTGGCGAAGTCCCTTTCAGAG GTGGTGATATGGATCGGCTGGTAGCCAGTGTGCCTGGCATGGAAGGCTTTC
genomic: ATATTTCTCTTTACCCCAACTCATTGAAGCTGGCGAAGTCCCTTTCAGAGgttcactttc ... taatctccagGTGGTGATATGGATCGGCTGGTAGCCAGTGTGCCTGGCATGGAAGGCTTTC
EST:
gi|161712054|gb|FC061426.1|FC061426EST: ATATTTCTCTTTACCCCAACTCATTGAAGCTGGCGAAGTCCCTTTCAGAG GTGGTGATATGGATCGGCTGGTA
genomic: ATATTTCTCTTTACCCCAACTCATTGAAGCTGGCGAAGTCCCTTTCAGAGgttcactttc ... taatctccagGTGGTGATATGGATCGGCTGGTA
EST:
gi|161712867|gb|FC062042.1|FC062042EST: ATATTTCTCTTTACCCCATCTCATTGAAGCTGGCGAAGTCCCTTTCAGAG GTGGTGATATGGATCGGCTGGTAGCCAGTGTGCCTGGCATGGAAGGCTTTC
genomic: ATATTTCTCTTTACCCCAACTCATTGAAGCTGGCGAAGTCCCTTTCAGAGgttcactttc ... taatctccagGTGGTGATATGGATCGGCTGGTAGCCAGTGTGCCTGGCATGGAAGGCTTTC
EST:
gi|161715284|gb|FC064591.1|FC064591EST: ATATTTCTCTTTACCCCAACTCATTGAAGCTGGCGAAGTCCCTTTCAGAG GTGGTGATATGGATCGGCTGGTAGCCAGTGTGCCTGGCATGGAAGGCTTTC
genomic: ATATTTCTCTTTACCCCAACTCATTGAAGCTGGCGAAGTCCCTTTCAGAGgttcactttc ... taatctccagGTGGTGATATGGATCGGCTGGTAGCCAGTGTGCCTGGCATGGAAGGCTTTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGACTTCCCGTCATTATTTTCCGTCCTATCAGTGCTTGTTCCTTCTGGGCATATTTCTCTTTACCCCAACTCATTGAAGCTGGCGAAGTCCCTTTCAGAGgttcactttctgatttggattccattagaaacgctctttatcttcgtttctttttcttttttcccttctttctcttattttttttcccctggttaattacaaactggctagattatgactaatctccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG