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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTCTGAGAACGAGATCAAGCAACTCTGCGTTGCATCCAGGGAAATTTTTCTTCAGCAATCCAATCTTCTCGAACTCGAAGCCCCTATCAAGATTTGTGgtatgttttgatttgattcgattcgattctttttttccctttttctttttggtgggtgtggtttcaatggttgtgagtttcgattaggtttccgatgttc...

Basic information

species Vitis vinifera
transcript Vv13s0019g02410.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g02410.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA02G41890.1 (Glycine max), 5'ss of exon 1
CTCTCTGAGAACGAGATCAAGCAACTCTGCGTTGCATCCAGGGAAATTTTTCTTCAGCAATCCAATCTTCTCGAACTCGAAGCCCCTATCAAGATTTGTGgtatgt-tttgatttgattcgattcgattctttttttccctttttctttttggtgggtgtggtttc--aatggttgtgagtttcgattaggtttccgatgttc
||||| |||   |||||||||||||||||||| || ||||| || || ||  || | ||  ||||| | || |||||||||||||| ||||||||||||||||    |||   ||  |||   |  | ||   |        |  || ||| |||  |  |||||   |||| || || || ||  ||   | |   | |   
CTCTCCGAGTCTGAGATCAAGCAACTCTGCGTCGCTTCCAGAGACATCTTCATTAACCAGCCCAATTTGCTTGAACTCGAAGCCCCCATCAAGATTTGTGgtaccccttttgctttcttctcctttactcccctcaatttgctccctcttttgtgtttagggtttagaaatgcttctgggtgtcctttgtttgttgcaag---

upper sequence: Vv13s0019g02410.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA14G07080.1 (Glycine max), 5'ss of exon 1
CTCTCTGAGAACGAGATCAAGCAACTCTGCGTTGCATCCAGGGAAATTTTTCTTCAGCAATCCAATCTTCTCGAACTCGAAGCCCCTATCAAGATTTGTGgtatgt-tttgatttgattcgattcgattctttttttccctttttctttttggtgggtgtggtttcaa--tggttgtgagtttcgattaggtttccgatgttc
||||| |||   |||||||||||||| ||||| || ||||| || || ||  || | ||  ||||| | || |||||||||||||| ||||||||||||||||    |||   ||  |||   | |  |||    |    ||  ||  ||| |||  |  ||||| ||  |  || || || |   ||   | |   | ||| 
CTCTCCGAGTCTGAGATCAAGCAACTTTGCGTCGCTTCCAGAGACATCTTCATTAACCAGCCCAATTTGCTTGAACTCGAAGCCCCCATCAAGATTTGTGgtaccccttttgctttcttctccttg--tctcccctcaatttgctcccttttgtgtttagggtttaaaagtacttctgggtgtttcttgtttgttgcaagtt-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30134361|gb|CB919699.1|CB919699
EST:     TCTTCAGCAATCCAATCTTCTCGAACTCGAAGCCCCTATCAAGATTTGTG                         GTGATATTCATGGGCAATACAGTGACTTGTTAAGGCTTTTTGAATACGGGG
genomic: TCTTCAGCAATCCAATCTTCTCGAACTCGAAGCCCCTATCAAGATTTGTGgtatgttttg ... gtggtttcagGTGATATTCATGGGCAATACAGTGACTTGTTAAGGCTTTTTGAATACGGGG
EST: gi|71859511|gb|DT008566.1|DT008566
EST:     TCTTCAGCAATCCAATCTTCTCGAACTCGAAGCCCCTATCAAGATTTGTG                         GTGATATTCATGGGCAATACAGTGACTTGTTAAGGCTTTTTGAATACGGGG
genomic: TCTTCAGCAATCCAATCTTCTCGAACTCGAAGCCCCTATCAAGATTTGTGgtatgttttg ... gtggtttcagGTGATATTCATGGGCAATACAGTGACTTGTTAAGGCTTTTTGAATACGGGG
EST: gi|351026429|gb|FQ428441.1|FQ428441
EST:     TCTTCAGCAATCCAATCTTCTCGAACTCGAAGCCCCTATCAAGATTTGTG                         GTGATATTCATGGGCAATACAGTGACTTGTTAAGGCTTTTTGAATACGGGG
genomic: TCTTCAGCAATCCAATCTTCTCGAACTCGAAGCCCCTATCAAGATTTGTGgtatgttttg ... gtggtttcagGTGATATTCATGGGCAATACAGTGACTTGTTAAGGCTTTTTGAATACGGGG
EST: gi|37188945|gb|CF608294.1|CF608294
EST:     TCTTCAGCAATCCAATCTTCTCGAACTCGAAGCCCCTATCAAGATTTGTG                         GTGATATTCATGGGCAATACAGTGACTTGTTAAGGCTTTTTGAATACGGGG
genomic: TCTTCAGCAATCCAATCTTCTCGAACTCGAAGCCCCTATCAAGATTTGTGgtatgttttg ... gtggtttcagGTGATATTCATGGGCAATACAGTGACTTGTTAAGGCTTTTTGAATACGGGG
EST: gi|161715255|gb|FC065804.1|FC065804
EST:     TCTTCAGCAATCCAATCTTCTCGAACTCGAAGCCCCTATCAAGATTTGTG                         GTGATATTCATGGGCAATACAGTGACTTGTTAAGGCTTTTTGAATACGGGG
genomic: TCTTCAGCAATCCAATCTTCTCGAACTCGAAGCCCCTATCAAGATTTGTGgtatgttttg ... gtggtttcagGTGATATTCATGGGCAATACAGTGACTTGTTAAGGCTTTTTGAATACGGGG
EST: gi|352768147|gb|FQ467286.1|FQ467286
EST:     TCTTCAGCAATCCAATCTTCTCGAACTCGAAGCCCCTATCAAGATTTGTG                         GTGATATTCATGGGCAATACAGTGACTTGTTAAGGCTTTTTGAATACGGGG
genomic: TCTTCAGCAATCCAATCTTCTCGAACTCGAAGCCCCTATCAAGATTTGTGgtatgttttg ... gtggtttcagGTGATATTCATGGGCAATACAGTGACTTGTTAAGGCTTTTTGAATACGGGG
EST: gi|71858831|gb|DT007886.1|DT007886
EST:     TCTTCAGCAATCCAATCTTCTCGAACTCGAAGCCCCTATCAAGATTTGTG                         GTGATATTCATGGGCAATACAGTGACTTGTTAAGGCTTTTTGAATACGGGG
genomic: TCTTCAGCAATCCAATCTTCTCGAACTCGAAGCCCCTATCAAGATTTGTGgtatgttttg ... gtggtttcagGTGATATTCATGGGCAATACAGTGACTTGTTAAGGCTTTTTGAATACGGGG
EST: gi|294966379|gb|GW839486.1|GW839486
EST:     TCTTCAGCAATCCAATCTTCTCGAACTCGAAGCCCCTATCAAGATTTGTG                         GTGATATTCATGGGCAATACAGTGACTTGTTAAGGCTTTTTGAATACGGGG
genomic: TCTTCAGCAATCCAATCTTCTCGAACTCGAAGCCCCTATCAAGATTTGTGgtatgttttg ... gtggtttcagGTGATATTCATGGGCAATACAGTGACTTGTTAAGGCTTTTTGAATACGGGG
EST: gi|26257357|gb|CA808420.1|CA808420
EST:     TCTTCAGCAATCCAATCTTCTCGAACTCGAAGCCCCTATCAAGATTTGTG                         GTGATATTCATGGGCAATACAGTGACTTGTGAAGGCTTTTTGAATACGGGG
genomic: TCTTCAGCAATCCAATCTTCTCGAACTCGAAGCCCCTATCAAGATTTGTGgtatgttttg ... gtggtttcagGTGATATTCATGGGCAATACAGTGACTTGTTAAGGCTTTTTGAATACGGGG
EST: gi|30133974|gb|CB919313.1|CB919313
EST:     TCTTCAGCAATCCAATCTTCTCGAACTCGAAGCCCCTATCAAGATTTGTG                         GTGATATTCATGGGCAATACAGTGACTTGTTAAGGCTTTTTGAATACGGGG
genomic: TCTTCAGCAATCCAATCTTCTCGAACTCGAAGCCCCTATCAAGATTTGTGgtatgttttg ... gtggtttcagGTGATATTCATGGGCAATACAGTGACTTGTTAAGGCTTTTTGAATACGGGG
EST: gi|161718447|gb|FC064797.1|FC064797
EST:     TCTTCAGCAATCCAATCTTCTCGAACTCGAAGCCCCTATCAAGATTTGTG                         GTGATATTCATGGGCAATACAGTGACTTGTTAAGGCTTTTTGAATACGGGG
genomic: TCTTCAGCAATCCAATCTTCTCGAACTCGAAGCCCCTATCAAGATTTGTGgtatgttttg ... gtggtttcagGTGATATTCATGGGCAATACAGTGACTTGTTAAGGCTTTTTGAATACGGGG