1 5' 3' | 2 5' 3' | 3 5' 3' |
AGGTAGTGCAAGATGGCAGATGGTGAGGATGTTCAACCACTTGTCTGTGATAATGGAACAGGAATGGTTAAGgtatcaaatgaggattctttctatgtgaatgtttagtagaatgcttgtattctacagtctgcctttttcttgtattcagtctgagataactgattgcaatgttatcttctag
species | Vitis vinifera |
transcript | Vv13s0019g01240.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GTGAGGATGTTCAACCACTTGTCTGTGATAATGGAACAGGAATGGTTAAG GCTGGATTTGCAGGAGATGATGCTCCTAGGGCTGTGTTCCCCAGCATTGTAEST: gi|161715264|gb|FC066449.1|FC066449
genomic: GTGAGGATGTTCAACCACTTGTCTGTGATAATGGAACAGGAATGGTTAAGgtatcaaatg ... tatcttctagGCTGGATTTGCAGGAGATGATGCTCCTAGGGCTGTGTTCCCCAGCATTGTA
EST: GTGAGGATGTTCAACCACTTGTCTGCGATAATGGAACAGGAATGGTTAAG GCTGGATTTGCAGGAGATGATGCTCCTAGGGCTGTGTTTCCCAGCATTGTAEST: gi|110709422|gb|EE084868.1|EE084868
genomic: GTGAGGATGTTCAACCACTTGTCTGTGATAATGGAACAGGAATGGTTAAGgtatcaaatg ... tatcttctagGCTGGATTTGCAGGAGATGATGCTCCTAGGGCTGTGTTCCCCAGCATTGTA
EST: GTGAGGATGTTCAACCACTTGTCTGTGATAATGGAACAGGAATGGTTAAG GCTGGATTTGCAGGAGATGATGCTCCTAGGGCTGTGTTCCCCAGCATTGTAEST: gi|110389813|gb|EC954682.1|EC954682
genomic: GTGAGGATGTTCAACCACTTGTCTGTGATAATGGAACAGGAATGGTTAAGgtatcaaatg ... tatcttctagGCTGGATTTGCAGGAGATGATGCTCCTAGGGCTGTGTTCCCCAGCATTGTA
EST: GTGAGGATGTTCAACCACTTGTCTGTGATAATGGAACAGGAATGGTTAAG GCTGGATTTGCAGGAGATGATGCTCCTAGGGCTGTGTTCCCCAGCATTGTA
genomic: GTGAGGATGTTCAACCACTTGTCTGTGATAATGGAACAGGAATGGTTAAGgtatcaaatg ... tatcttctagGCTGGATTTGCAGGAGATGATGCTCCTAGGGCTGTGTTCCCCAGCATTGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGTAGTGCAAGATGGCAGATGGTGAGGATGTTCAACCACTTGTCTGTGATAATGGAACAGGAATGGTTAAGgtatcaaatgaggattctttctatgtgaatgtttagtagaatgcttgtattctacagtctgcctttttcttgtattcagtctgagataactgattgcaatgttatcttctag
- - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - AGGATG