1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GGGTGGTACTTCTCTCTCTTTCTCTGTCTCTCGGCCACTTTTCGTGCTCTGCAAGCTTCATCATTGCTATTTTCTTCGTTCATTTCTCGTCTTCTCTCTCcggttggtacaatttggtggcggaattttcatataaagattgaagtttggagttgaaacttttgtattaagtgttgttttttgataattttttgggaggt...
species | Vitis vinifera |
transcript | Vv13s0019g00840.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCAAGCTTCATCATTGCTATTTTCTTCGTTCATTTCTCGTCTTCTCTCTC CGGATTGAAATAGAGTTCAATGGCGAAGGAAGTTTCCAATGGGGATCACAAEST: gi|71860037|gb|DT009092.1|DT009092
genomic: GCAAGCTTCATCATTGCTATTTTCTTCGTTCATTTCTCGTCTTCTCTCTCcggttggtac ... ttgttttgttCGGATTGAAATAGAGTTCAATGGCGAAGGAAGTTTCCAATGGGGATCACAA
EST: CAAAGCTTCATCATTGCTATTTTCTTCGTTCATTTCTCGTCTTCTCTCTC CGGATTGAAATAGAGTTCAATGGCGAAGGAAGTTTCCAATGGGGATCACAAEST: gi|110703601|gb|EE080591.1|EE080591
genomic: C-AAGCTTCATCATTGCTATTTTCTTCGTTCATTTCTCGTCTTCTCTCTCcggttggtac ... ttgttttgttCGGATTGAAATAGAGTTCAATGGCGAAGGAAGTTTCCAATGGGGATCACAA
EST: GCAAGCTTCATCATTGCTATTTTCTTCGTTCATTTCTCGTCTTCTCTCTC CGGATTGAAATAGAGTTCAATGGCGAAGGAAGTTTCCAATGGGGATCACAAEST: gi|71863746|gb|DT012801.1|DT012801
genomic: GCAAGCTTCATCATTGCTATTTTCTTCGTTCATTTCTCGTCTTCTCTCTCcggttggtac ... ttgttttgttCGGATTGAAATAGAGTTCAATGGCGAAGGAAGTTTCCAATGGGGATCACAA
EST: GCAAGCTTCATCATTGCTATTTTCTTCGTTCATTTCTCGTCTTCTCTCTC CGGATTGAAATAGAGTTCAATGGCGAAGGAAGTTTCCAATGGGGATCACAAEST: gi|110357315|gb|EC920771.1|EC920771
genomic: GCAAGCTTCATCATTGCTATTTTCTTCGTTCATTTCTCGTCTTCTCTCTCcggttggtac ... ttgttttgttCGGATTGAAATAGAGTTCAATGGCGAAGGAAGTTTCCAATGGGGATCACAA
EST: GCAAGCTTCATCATTGCTATTTTCTTCGTTCATTTCTCGTCTTCTCTCTC CGGATTGAAATAGAGTTCAATGGCGAAGGAAGTTTCCAATGGGGATCACAAEST: gi|110721290|gb|EE098120.1|EE098120
genomic: GCAAGCTTCATCATTGCTATTTTCTTCGTTCATTTCTCGTCTTCTCTCTCcggttggtac ... ttgttttgttCGGATTGAAATAGAGTTCAATGGCGAAGGAAGTTTCCAATGGGGATCACAA
EST: GCAAGCTTCATCATTGCTATTTTCTTCGTTCATTTCTCGTCTTCTCTCTC CGGATTGAAATAGAGTTCAATGGCGAAGGAAGTTTCCAATGGGGATCACAAEST: gi|110727671|gb|EE104694.1|EE104694
genomic: GCAAGCTTCATCATTGCTATTTTCTTCGTTCATTTCTCGTCTTCTCTCTCcggttggtac ... ttgttttgttCGGATTGAAATAGAGTTCAATGGCGAAGGAAGTTTCCAATGGGGATCACAA
EST: GCAAGCTTCATCATTGCTATTTTCTTCGTTCATTTCTCGTCTTCTCTCTC CGGATTGAAATAGAGTTCAATGGCGAAGGAAGTTTCCAATGGGGATCACAAEST: gi|110692310|gb|EE071412.1|EE071412
genomic: GCAAGCTTCATCATTGCTATTTTCTTCGTTCATTTCTCGTCTTCTCTCTCcggttggtac ... ttgttttgttCGGATTGAAATAGAGTTCAATGGCGAAGGAAGTTTCCAATGGGGATCACAA
EST: GCAAGCTTCATCATTGCTATTTTCTTCGTTCATTTCTCGTCTTCTCTCTC CGGATTGAAATAGAGTTCAATGGCGAAGGAAGTTTCCAATGGGGATCACAAEST: gi|110356627|gb|EC919593.1|EC919593
genomic: GCAAGCTTCATCATTGCTATTTTCTTCGTTCATTTCTCGTCTTCTCTCTCcggttggtac ... ttgttttgttCGGATTGAAATAGAGTTCAATGGCGAAGGAAGTTTCCAATGGGGATCACAA
EST: GCAAGCTTCATCATTGCTATTTTCTTCGTTCATTTCTCGTCTTCTCTCTC CGGATTGAAATAGAGTTCAATGGCGAAGGAAGTTTCCAATGGGGATCACAAEST: gi|30299440|gb|CB976234.1|CB976234
genomic: GCAAGCTTCATCATTGCTATTTTCTTCGTTCATTTCTCGTCTTCTCTCTCcggttggtac ... ttgttttgttCGGATTGAAATAGAGTTCAATGGCGAAGGAAGTTTCCAATGGGGATCACAA
EST: GCAAGCTTCATCATTGCTATTTTCTTCGTTCATTTCTCGTCTTCTCTCTC CGGATTGAAATAGAGTTCAATGGCGAAGGAAGTTTCCAATGGGGATCACAA
genomic: GCAAGCTTCATCATTGCTATTTTCTTCGTTCATTTCTCGTCTTCTCTCTCcggttggtac ... ttgttttgttCGGATTGAAATAGAGTTCAATGGCGAAGGAAGTTTCCAATGGGGATCACAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGTGGTACTTCTCTCTCTTTCTCTGTCTCTCGGCCACTTTTCGTGCTCTGCAAGCTTCATCATTGCTATTTTCTTCGTTCATTTCTCGTCTTCTCTCTCcggttggtacaatttggtggcggaattttcatataaagattgaagtttggagttgaaacttttgtattaagtgttgttttttgataattttttgggaggt
- - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataaaga