Sequence
atgc intronic sequence ATGC exonic sequenceTTCTTTCGTCCTCACGACTCCGCTTTATTACGTAAATGCCCCTCCCCACATGGGAAGTGCCTACACCACTATTGCTGCTGACGCCATTGCTCGATTTCAGgtaccctgttgtttgatttcttttgattgtattcggcttcgtggaagggatgattgttattttgttaacatttgtttggttggtgagaaagcggagaaaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g00810.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os03g11120.1 (Oryza sativa), 5'ss of exon 1
TTCTTTCGTCCTCACGACTCCGCTTTATTACGTAAATGCCCCTCCCCACATGGGAAGTGCCTACACCACTATTGCTGCTGACGCCATTGCTCGATTTCAGgtaccctgttgtt-tgatttcttttgattgtattcggcttcgtggaagggatgattgttattttgttaacatttgtttggttggtgagaaagcggagaaaa-
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GCCATACGTGCTCACCACGCCGCTCTACTACGTCAACGCCCCGCCGCACATGGGGAGCGCCTACACCACCATTGCCGCCGACGCCATCGCCCGCTTCCAGgcaagcaactaaagcgagcaagcctatgcgcgcgcgtttgcgttccattgctgctcgc-gttctaatcccagtc-tagggattttgagtacgtcaaactgtt
upper sequence: Vv13s0019g00810.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA10G43550.1 (Glycine max), 5'ss of exon 1
TTCTTTCGTCCTCACGACTCCGCTTTATTACGTAAATGCCCCTCCCCACATGGGAAGTGCCTACACCACTATTGCTGCTGACGCCATTGCTCGATTTCAGgta-----------ccctgttgt--ttgatttc--ttttgattgtat----tcggcttcgtggaagggatgattgttattt---tgttaacatttgtttggttggtgagaaagcggagaaaa----------------------
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ACCCTTTGTCCTCACTACTCCTCTCTATTACGTCAATGCCCCTCCTCACATGGGTAGTGCTTACACCACCATCGCCGCCGATGCCATTGCTCGCTTCCAGgttaacttatctatctctaccctcattgattttagtttaaattatgtaactttggtccaattccagaaatgttggtgttttaactgtttat-tttctcctattagtacataataatataaggtttgcatagttgaatttgacag
upper sequence: Vv13s0019g00810.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA20G23250.1 (Glycine max), 5'ss of exon 1
TTCTTTCGTCCTCACGACTCCGCTTTATTACGTAAATGCCCCTCCCCACATGGGAAGTGCCTACACCACTATTGCTGCTGACGCCATTGCTCGATTTCAGgtaccctgttgtttgatttcttttgattgtattcggcttcgtggaagggatgattgttattttgttaacatttgtttggttggtgagaaagcggagaaaa-----
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ACACTTTGTCCTCACTACCCCTCTCTACTACGTCAATGCTCCTCCCCACATGGGTAGCGCTTACACCACCATCGCTGCCGATGCCATTGCTCGCTTCCAGgttcaattctctatctctaccctc-attgattttagtttaaattatgtaactttggtccaattccagaaatgggtcgacttgg----aaattggactaaactgct
upper sequence: Vv13s0019g00810.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT3G55400.1 (Arabidopsis thaliana), 5'ss of exon 1
TTCTTTCGTCCTCACGACTCCGCTTTATTACGTAAATGCCCCTCCCCACATGGGAAGTGCCTACACCACTATTGCTGCTGACGCCATTGCTCGATTTCAGgtaccctgttgtttgatt--tcttttgattgtattcggcttcgtggaagggatga-----ttgttattttgttaacatttgtttggttggtgagaaagcggagaaaa
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GACATTTGTCCTCACCACTCCTCTTTATTACGTTAATGCCCCTCCCCACATGGGTAGTGCTTACACCACTATCGCCGCCGATTCAATTGCTCGTTTCCAGgt---ttgtttctcaatcagtctctgacttaaagtttcaatttttaaaggaatcaaagtgttgattttatgttgttatctgtgtag---------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71857108|gb|DT006163.1|DT006163EST: TGGGAAGTGCCTACACCACTATTGCTGCTGACGCCATTGCTCGATTTCAG AGGCTATCAGGAAAGAAAGTTATATTCATAACTGGCACAGATGAGCACGGG
genomic: TGGGAAGTGCCTACACCACTATTGCTGCTGACGCCATTGCTCGATTTCAGgtaccctgtt ... cttctggcagAGGCTATCAGGAAAGAAAGTTATATTCATAACTGGCACAGATGAGCATGGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTCTTTCGTCCTCACGACTCCGCTTTATTACGTAAATGCCCCTCCCCACATGGGAAGTGCCTACACCACTATTGCTGCTGACGCCATTGCTCGATTTCAGgtaccctgttgtttgatttcttttgattgtattcggcttcgtggaagggatgattgttattttgttaacatttgtttggttggtgagaaagcggagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaagggat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggagaaa