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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGCCGCATCAACCCTTCCTCTCTCCCAGgtacgtttccgtcttttcctctcctgtttggttgccgagaaagtgaagacaaacggaagaaactgaaaatctaaatcttgtaatttctgctgtttgaaac...

Basic information

species Vitis vinifera
transcript Vv13s0019g00250.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110688462|gb|EE067038.1|EE067038
EST:     CCCTTCCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: CCCTTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|110424953|gb|EC991328.1|EC991328
EST:     ATCAACCCTTCCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: ATCAACCCTTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|351026570|gb|FQ432468.1|FQ432468
EST:     GCAGCCGCATCAACCCTTCCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: GCAGCCGCATCAACCCTTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|110385983|gb|EC950550.1|EC950550
EST:     CCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: CCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|33407650|gb|CF213277.1|CF213277
EST:     GCAGCCGCATCAACCCTTCCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAACGGCTCCTGCTA
genomic: GCAGCCGCATCAACCCTTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|32268037|gb|CD717196.1|CD717196
EST:     GCCGCATCAACCCTTCCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: GCCGCATCAACCCTTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|110401007|gb|EC967598.1|EC967598
EST:     GCATCAACCCTTCCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: GCATCAACCCTTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|87584424|gb|DY473607.1|DY473607
EST:     GCAGCCGCATCAACCCTTCCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: GCAGCCGCATCAACCCTTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|351024094|gb|FQ423517.1|FQ423517
EST:     GCAGCCGCATCAACCCTTCCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: GCAGCCGCATCAACCCTTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|351019485|gb|FQ429620.1|FQ429620
EST:     GCAGCCGCATCAACCCTTCCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: GCAGCCGCATCAACCCTTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|351015356|gb|FQ445640.1|FQ445640
EST:     GCAGCCGCATCAACCCTCCCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: GCAGCCGCATCAACCCTTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|71874223|gb|DT023278.1|DT023278
EST:     CCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: CCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|351022551|gb|FQ447073.1|FQ447073
EST:     GCAGCCGCATCAACCCTTCCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: GCAGCCGCATCAACCCTTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|71866219|gb|DT015274.1|DT015274
EST:     AACCCTTCCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: AACCCTTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|352798732|gb|FQ478367.1|FQ478367
EST:     GCAGCCGCATCAACCCTTCCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: GCAGCCGCATCAACCCTTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|77585769|gb|DV221981.1|DV221981
EST:     GCAGCCGCATCAACCCTTCCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: GCAGCCGCATCAACCCTTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|110358012|gb|EC921923.1|EC921923
EST:     TTCCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: TTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|351031276|gb|FQ445301.1|FQ445301
EST:     GCAGCCGCATCAACCCTTCCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTTGCATCCTGCAATGGCTCCTGCT
genomic: GCAGCCGCATCAACCCTTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAG-TTTTTGCATCCTGCAATGGCTCCTGCT
EST: gi|37188705|gb|CF608054.1|CF608054
EST:     CTTCCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: CTTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|352794786|gb|FQ475281.1|FQ475281
EST:     GCAGCCGCATCAACCCTTCCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: GCAGCCGCATCAACCCTTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|110397454|gb|EC963194.1|EC963194
EST:     AGCCGCATCAACCCTTCCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: AGCCGCATCAACCCTTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|110705535|gb|EE082493.1|EE082493
EST:     CTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: CTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|351022935|gb|FQ428844.1|FQ428844
EST:     GCAGCCGCATCAACCCTTCCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: GCAGCCGCATCAACCCTTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|351017294|gb|FQ435646.1|FQ435646
EST:     GCAGCCGCATCAACCCTTCCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: GCAGCCGCATCAACCCTTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|351041471|gb|FQ431497.1|FQ431497
EST:     GCAGCCGCATCAACCCTTCCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: GCAGCCGCATCAACCCTTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|351025316|gb|FQ434329.1|FQ434329
EST:     GCAGCCGCATCAACCCTTCCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: GCAGCCGCATCAACCCTTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|34546152|gb|CF514384.1|CF514384
EST:     GCAGCCGCATCAACCCTTCCTCTCTCCCAG                         GTTTGGAAGTGCTCTATGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: GCAGCCGCATCAACCCTTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|351034464|gb|FQ463277.1|FQ463277
EST:     GCCGCATCAACCCTTCCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: GCCGCATCAACCCTTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|351040253|gb|FQ425339.1|FQ425339
EST:     GCAGCCGCATCAACCCTTCCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: GCAGCCGCATCAACCCTTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|110427033|gb|EC993464.1|EC993464
EST:     CCTTCCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: CCTTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|77581490|gb|DV219684.1|DV219684
EST:     CCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: CCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|33407736|gb|CF213363.1|CF213363
EST:     GCAGCCGCATCAACCCTTCCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAACGGCTCCTGCTA
genomic: GCAGCCGCATCAACCCTTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|351040059|gb|FQ425145.1|FQ425145
EST:     GCAGCCGCATCAACCCTTCCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: GCAGCCGCATCAACCCTTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|110691014|gb|EE068628.1|EE068628
EST:     CTTCCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: CTTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|110378352|gb|EC943479.1|EC943479
EST:     GCCGCATCAACCCTTCCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: GCCGCATCAACCCTTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|37188762|gb|CF608111.1|CF608111
EST:     TTCCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: TTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|351049057|gb|FQ431601.1|FQ431601
EST:     GCAGCCGCATCAACCCTTCCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: GCAGCCGCATCAACCCTTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|351040964|gb|FQ443740.1|FQ443740
EST:     GCAGCCGCATCAACCCTTCCTCTCTTCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: GCAGCCGCATCAACCCTTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|351015928|gb|FQ431883.1|FQ431883
EST:     GCAGCCGCATCAACCCTTCCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGTTCCTGCTA
genomic: GCAGCCGCATCAACCCTTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|351025380|gb|FQ435072.1|FQ435072
EST:     GCAGCCGCATCAACCCTTCCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: GCAGCCGCATCAACCCTTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|110732209|gb|EE107294.1|EE107294
EST:     AACCCTTCCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: AACCCTTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|37187755|gb|CF607108.1|CF607108
EST:     CATCAACCCTTCCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: CATCAACCCTTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|33409901|gb|CF215528.1|CF215528
EST:     GCAGCCGCATCAACCCTTCCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGGATCNTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: GCAGCCGCATCAACCCTTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|77581308|gb|DV219585.1|DV219585
EST:     CCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: CCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|110398202|gb|EC964392.1|EC964392
EST:     CCTTCCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: CCTTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|110689642|gb|EE066055.1|EE066055
EST:     CCTTCCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: CCTTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|110693455|gb|EE069699.1|EE069699
EST:     CCCTTCCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: CCCTTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|30135975|gb|CB921313.1|CB921313
EST:     CAACCCTTCCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: CAACCCTTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|349826876|gb|FQ418967.1|FQ418967
EST:     GCAGCCGCATCAACCCTTCCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: GCAGCCGCATCAACCCTTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|351029071|gb|FQ435271.1|FQ435271
EST:     GCAGCCGCATCAACCCTTCCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: GCAGCCGCATCAACCCTTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|349831052|gb|FQ420722.1|FQ420722
EST:     GCAGCCGCATCAACCCTTCCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: GCAGCCGCATCAACCCTTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|110731174|gb|EE109098.1|EE109098
EST:     CATCAACCCTTCCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: CATCAACCCTTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|110405089|gb|EC970622.1|EC970622
EST:     TCCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: TCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|349828347|gb|FQ416300.1|FQ416300
EST:     GCAGCCTCATCAACCCTTCCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCGATGGCTCCTGCTA
genomic: GCAGCCGCATCAACCCTTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|110701169|gb|EE078463.1|EE078463
EST:     CGCATCAACCCTTCCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: CGCATCAACCCTTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|351045311|gb|FQ451759.1|FQ451759
EST:     GCAGCCGCATCAACCCTTCCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: GCAGCCGCATCAACCCTTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|110703496|gb|EE080395.1|EE080395
EST:     CTTCCTCTCTCCCA-                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: CTTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|351030992|gb|FQ439028.1|FQ439028
EST:     GCAGCCGCATCAACCCTTCCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: GCAGCCGCATCAACCCTTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|352787182|gb|FQ477802.1|FQ477802
EST:     GCAGCCGCATCAACCCTTCCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: GCAGCCGCATCAACCCTTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|110394508|gb|EC959611.1|EC959611
EST:     CCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: CCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|110361115|gb|EC924568.1|EC924568
EST:     CTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: CTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|110702091|gb|EE080407.1|EE080407
EST:     CATCAACCCTTCCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: CATCAACCCTTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|351014099|gb|FQ434251.1|FQ434251
EST:     GCAGCCGCATCAACCCTTCCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: GCAGCCGCATCAACCCTTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|110397173|gb|EC962897.1|EC962897
EST:     CCCTTCCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: CCCTTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|110363300|gb|EC926877.1|EC926877
EST:     CCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: CCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|110702263|gb|EE080779.1|EE080779
EST:     CTTCCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: CTTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
EST: gi|349830993|gb|FQ418277.1|FQ418277
EST:     GCAGCCGCATCAACCCTTCCTCTCTCCCAG                         GTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA
genomic: GCAGCCGCATCAACCCTTCCTCTCTCCCAGgtacgtttcc ... ttttttccagGTTTGGAAGTGCTTTAAGCAGAGTTTTTGCATCCTGCAATGGCTCCTGCTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCAGCCGCATCAACCCTTCCTCTCTCCCAGgtacgtttccgtcttttcctctcctgtttggttgccgagaaagtgaagacaaacggaagaaactgaaaatctaaatcttgtaatttctgctgtttgaaac

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaatc