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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACCAAAGAATCGTGTGAATTCAACCAGAGGAGAAAAAAAAAAAGAAAAAATTGTTGTTTCCACCCTTGTTTATCTACTTCTCCTAAGTTTCCTTACCAGgttagcgagcaaaatactgaaagatacactataattcttgttttgcttcttttggatgtattggattctcttgctttgtttcaagttccaattcaggcttaaatgtaacaaaatttgcttatagaagcatcaatttggtttag

Basic information

species Vitis vinifera
transcript Vv12s0142g00360.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110710338|gb|EE086596.1|EE086596
EST:     TTGTTGTTTCCACCCTTGTTTATCTACTTCTCCTAAGTTTCCTTACCAG                         CTCATTTCAGCTTTCAACCACGGAGTTTCCGAATCAAGCCTCGGAGGGGTC
genomic: TTGTTGTTTCCACCCTTGTTTATCTACTTCTCCTAAGTTTCCTTACCAGgttagcgagc ... tttggtttagCTCATTTCAGCTTTCAACCACGGAGTTTCCGAATCAAGCCTCGGAGGGGTC
EST: gi|30298778|gb|CB975572.1|CB975572
EST:     TGTTGTTTCCACCCTTGTTTATCTACTTCTCCTAAGTTTCCTTACCAG                         CTCATTTCAGCTTTCAACCACGGAGTTTCCGAATCAAGCCTCGGAGGGGTC
genomic: TGTTGTTTCCACCCTTGTTTATCTACTTCTCCTAAGTTTCCTTACCAGgttagcgagc ... tttggtttagCTCATTTCAGCTTTCAACCACGGAGTTTCCGAATCAAGCCTCGGAGGGGTC