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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTCCTCAAAGTTCACAGAGCTTTTCCAGCCCGGTTGGGCTTTTGACCATTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccataccttcaccaaaatcttcccttttaatcctttttttttttttttttcatatatgaccaatgtgtcttctgggttccatttttttctcatgaatcagctgtttttacattgtttcagtatctgtgtgactgaagtttgtgtattaatggtgatcgatgatttcag

Basic information

species Vitis vinifera
transcript Vv12s0134g00160.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0134g00160.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA13G38040.2 (Glycine max), 5'ss of exon 1
TCTTCCTCAAAGTTCACAGAGCTTTTCCAGCCCGGTTGGGCTTTTGACCATTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccataccttcaccaaaatcttcccttttaatcctttttttttttttttttcatatatgaccaatgtgtcttctgggttccatttttttctcatgaatcagctgtttttacattgttt--cagta--tctgtgtgactgaagtttgtgtattaatggtgatcgatgatttcag
 | ||  | |||||    || || ||||||||| |||||||| | ||||||||| || | |||||||| |||||||| || |||||||| |||||||||||||    | | |  |||||         | |||    |||  |   || |  | ||| | |     |||| | | ||  |    || ||  ||  |||| ||  | |  | |  || |||   | ||   || | || || || ||||    ||  |  || | |          
GCCTCTGCCAAGTTTGATGAACTCTTCCAGCCCAGTTGGGCTATGGACCATTTCATCCATGAAGGAGAACTTCTCAAACTCAAACTTGATAACTATTCTGgtaattgatcatt-ccaaa-------tctctaac---tttcctgccttgtcatgatacaaggt---tgtggcatttgcataatgttcttacctt-tgaagcatttttagtaatgttatttgttaatagccctttatgtct-aattttgcactttttttttgttag----------

upper sequence: Vv12s0134g00160.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA13G38040.1 (Glycine max), 5'ss of exon 1
TCTTCCTCAAAGTTCACAGAGCTTTTCCAGCCCGGTTGGGCTTTTGACCATTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccataccttcaccaaaatcttcccttttaatcctttttttttttttttttcatatatgaccaatgtgtcttctgggttccatttttttctcatgaatcagctgtttttacattgtttcagtatctgtgtgactgaagtttgtgtattaatggtgatcgatgatttcag
 | ||  | |||||    || || ||||||||| |||||||| | ||||||||| || | |||||||| |||||||| || |||||||| |||||||||||||    | | |  |||||         | |||    |||  |   || |  | ||| | |     |||| | | ||  |    || ||  ||  |||| ||  | |  | |  |                                                        
GCCTCTGCCAAGTTTGATGAACTCTTCCAGCCCAGTTGGGCTATGGACCATTTCATCCATGAAGGAGAACTTCTCAAACTCAAACTTGATAACTATTCTGgtaattgatcatt-ccaaa-------tctctaac---tttcctgccttgtcatgatacaaggt---tgtggcatttgcataatgttcttacctt-tgaagcatttttagtaatgt--------------------------------------------------------

upper sequence: Vv12s0134g00160.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA12G32390.1 (Glycine max), 5'ss of exon 1
TCTTCCTCAAAGTTCACAGAGCTTTTCCAGCCCGGTTGGGCTTTTGACCATTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccataccttcaccaaaatcttcccttttaatcctttttttttttttttttcatatatgaccaatgtgtc-ttctgggttccatttttttctcatgaatcagctgtttttacattgtttcagtatctgtgtgactgaa-gtttgtgtattaatggtgatcgatgatttcag------------------
 | ||  | |||||    || || ||||||||| |||||||| | ||||||||| || | |||||||| || ||||| || |||||||| |||||||||||||    ||| |   |      || | ||  |  ||| |||  |  | || ||  ||   ||||| | | |  || | |    ||||||||| |  |  ||| | |  ||     |   || | || |  ||  ||  |   ||||||| ||| |        |  || | |                   
GCCTCTGCCAAGTTTGATGAACTCTTCCAGCCCAGTTGGGCTATGGACCATTTCATCCATGAAGGAGAACTCCTCAAACTCAAACTTGATAACTATTCTGgtaattaaccattttctgg---tttctttgaagacctgtttagtaatgttattgttaacagaccattatctaattttagacaacatttttttttgttagatctggttcttaacggtccatttaataccattgcaacaaatcatttgtgtgttattttaagctaaacatgttacctttttgggacattgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110688980|gb|EE068148.1|EE068148
EST:     TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTG                         GAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
genomic: TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccatacc ... atgatttcagGAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
EST: gi|351017461|gb|FQ435814.1|FQ435814
EST:     TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTG                         GAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
genomic: TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccatacc ... atgatttcagGAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
EST: gi|351028725|gb|FQ433155.1|FQ433155
EST:     TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTG                         GAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
genomic: TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccatacc ... atgatttcagGAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
EST: gi|351040743|gb|FQ438287.1|FQ438287
EST:     TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTG                         GAGCTAGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
genomic: TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccatacc ... atgatttcagGAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
EST: gi|110686933|gb|EE063904.1|EE063904
EST:     TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTG                         GAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
genomic: TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccatacc ... atgatttcagGAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
EST: gi|351029572|gb|FQ427412.1|FQ427412
EST:     TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTG                         GAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
genomic: TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccatacc ... atgatttcagGAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
EST: gi|349827004|gb|FQ419095.1|FQ419095
EST:     TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTG                         GAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
genomic: TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccatacc ... atgatttcagGAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
EST: gi|351027321|gb|FQ444570.1|FQ444570
EST:     TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTG                         GAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
genomic: TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccatacc ... atgatttcagGAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
EST: gi|349825987|gb|FQ415792.1|FQ415792
EST:     TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTG                         GAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
genomic: TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccatacc ... atgatttcagGAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
EST: gi|351012306|gb|FQ429991.1|FQ429991
EST:     TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTG                         GAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
genomic: TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccatacc ... atgatttcagGAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
EST: gi|349832943|gb|FQ423065.1|FQ423065
EST:     TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTG                         GAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
genomic: TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccatacc ... atgatttcagGAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
EST: gi|71867531|gb|DT016586.1|DT016586
EST:     TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTG                         GAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
genomic: TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccatacc ... atgatttcagGAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
EST: gi|349825692|gb|FQ421791.1|FQ421791
EST:     TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTG                         GAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
genomic: TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccatacc ... atgatttcagGAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
EST: gi|110699501|gb|EE076556.1|EE076556
EST:     TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTG                         GAGCTGGGTTTTCCTCCAAAAGCAAGTACATG-TTGGAAAGGTCAGTATTC
genomic: TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccatacc ... atgatttcagGAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
EST: gi|349829506|gb|FQ420038.1|FQ420038
EST:     TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTG                         GAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
genomic: TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccatacc ... atgatttcagGAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
EST: gi|351040990|gb|FQ443766.1|FQ443766
EST:     CAACTATTCTG                         GAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
genomic: CAACTATTCTGgtaccatacc ... atgatttcagGAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
EST: gi|351052121|gb|FQ455414.1|FQ455414
EST:     TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTG                         GAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
genomic: TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccatacc ... atgatttcagGAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
EST: gi|30253115|gb|CB970666.1|CB970666
EST:     TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTG                         GAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
genomic: TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccatacc ... atgatttcagGAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
EST: gi|71866834|gb|DT015889.1|DT015889
EST:     TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTG                         GAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
genomic: TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccatacc ... atgatttcagGAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
EST: gi|71875269|gb|DT024324.1|DT024324
EST:     TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTG                         GAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
genomic: TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccatacc ... atgatttcagGAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
EST: gi|71869588|gb|DT018643.1|DT018643
EST:     TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTG                         GAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
genomic: TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccatacc ... atgatttcagGAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
EST: gi|349832307|gb|FQ420868.1|FQ420868
EST:     TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTG                         GAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
genomic: TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccatacc ... atgatttcagGAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
EST: gi|351015305|gb|FQ445589.1|FQ445589
EST:     TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTG                         GAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
genomic: TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccatacc ... atgatttcagGAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
EST: gi|161712829|gb|FC062352.1|FC062352
EST:     TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTG                         GAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
genomic: TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccatacc ... atgatttcagGAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
EST: gi|351012384|gb|FQ426985.1|FQ426985
EST:     TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTG                         GAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
genomic: TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccatacc ... atgatttcagGAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
EST: gi|349823526|gb|FQ414936.1|FQ414936
EST:     TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTG                         GAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
genomic: TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccatacc ... atgatttcagGAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
EST: gi|71866337|gb|DT015392.1|DT015392
EST:     TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTG                         GAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
genomic: TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccatacc ... atgatttcagGAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
EST: gi|110688683|gb|EE067515.1|EE067515
EST:     TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTG                         GAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
genomic: TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccatacc ... atgatttcagGAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
EST: gi|110693623|gb|EE070014.1|EE070014
EST:     TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTG                         GAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
genomic: TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccatacc ... atgatttcagGAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
EST: gi|349829444|gb|FQ419976.1|FQ419976
EST:     TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTG                         GAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
genomic: TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccatacc ... atgatttcagGAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
EST: gi|349830610|gb|FQ416908.1|FQ416908
EST:     TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTG                         GAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
genomic: TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccatacc ... atgatttcagGAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
EST: gi|351040330|gb|FQ434463.1|FQ434463
EST:     TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTG                         GAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
genomic: TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccatacc ... atgatttcagGAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
EST: gi|351041004|gb|FQ443780.1|FQ443780
EST:     TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTG                         GAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
genomic: TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccatacc ... atgatttcagGAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
EST: gi|351026240|gb|FQ428252.1|FQ428252
EST:     TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTG                         GAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
genomic: TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccatacc ... atgatttcagGAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
EST: gi|349828623|gb|FQ418358.1|FQ418358
EST:     TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTG                         GAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
genomic: TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccatacc ... atgatttcagGAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
EST: gi|110398647|gb|EC965117.1|EC965117
EST:     GGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTG                         GAGCTGGG-TTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
genomic: GGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccatacc ... atgatttcagGAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
EST: gi|110685903|gb|EE063040.1|EE063040
EST:     TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTG                         GAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
genomic: TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccatacc ... atgatttcagGAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
EST: gi|351031870|gb|FQ460127.1|FQ460127
EST:     TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTG                         GAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
genomic: TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccatacc ... atgatttcagGAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
EST: gi|71868382|gb|DT017437.1|DT017437
EST:     TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTG                         GAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
genomic: TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccatacc ... atgatttcagGAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
EST: gi|351016494|gb|FQ423921.1|FQ423921
EST:     TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTG                         GAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
genomic: TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccatacc ... atgatttcagGAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
EST: gi|349828094|gb|FQ415422.1|FQ415422
EST:     TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTG                         GAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
genomic: TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccatacc ... atgatttcagGAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
EST: gi|351025289|gb|FQ434302.1|FQ434302
EST:     TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTG                         GAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
genomic: TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccatacc ... atgatttcagGAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
EST: gi|351012970|gb|FQ433697.1|FQ433697
EST:     TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTG                         GAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
genomic: TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccatacc ... atgatttcagGAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
EST: gi|351013795|gb|FQ433947.1|FQ433947
EST:     CAACTATTCTG                         GAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
genomic: CAACTATTCTGgtaccatacc ... atgatttcagGAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
EST: gi|349830705|gb|FQ417003.1|FQ417003
EST:     TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTG                         GAGCTGGGTTTTCTTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
genomic: TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccatacc ... atgatttcagGAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
EST: gi|110687595|gb|EE065187.1|EE065187
EST:     TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTG                         GAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
genomic: TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccatacc ... atgatttcagGAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
EST: gi|351033100|gb|FQ446453.1|FQ446453
EST:     TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTG                         GAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTT
genomic: TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccatacc ... atgatttcagGAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
EST: gi|351034298|gb|FQ448095.1|FQ448095
EST:     TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTG                         GAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
genomic: TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccatacc ... atgatttcagGAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
EST: gi|71865855|gb|DT014910.1|DT014910
EST:     TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTG                         GAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
genomic: TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccatacc ... atgatttcagGAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
EST: gi|110686348|gb|EE063884.1|EE063884
EST:     TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTG                         GAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
genomic: TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccatacc ... atgatttcagGAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
EST: gi|349828857|gb|FQ419190.1|FQ419190
EST:     TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTG                         GAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
genomic: TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccatacc ... atgatttcagGAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
EST: gi|71871566|gb|DT020621.1|DT020621
EST:     TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTG                         GAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
genomic: TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccatacc ... atgatttcagGAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
EST: gi|349816739|gb|FQ404986.1|FQ404986
EST:     TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTG                         GAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
genomic: TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccatacc ... atgatttcagGAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
EST: gi|71866631|gb|DT015686.1|DT015686
EST:     TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTG                         GAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
genomic: TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccatacc ... atgatttcagGAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
EST: gi|351018859|gb|FQ425761.1|FQ425761
EST:     TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTG                         GAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
genomic: TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccatacc ... atgatttcagGAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
EST: gi|351031433|gb|FQ446636.1|FQ446636
EST:     TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTG                         GAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC
genomic: TTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccatacc ... atgatttcagGAGCTGGGTTTTCCTCCAAAAGCAAGTACATGTTTGGAAAGGTCAGTATTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTTCCTCAAAGTTCACAGAGCTTTTCCAGCCCGGTTGGGCTTTTGACCATTTCCTCTACGAAGGAGAGCTTCTCAAGCTAAAACTTGACAACTATTCTGgtaccataccttcaccaaaatcttcccttttaatcctttttttttttttttttcatatatgaccaatgtgtcttctgggttccatttttttctcatgaatcagctgtttttacattgtttcagtatctgtgtgactgaagtttgtgtattaatggtgatcgatgatttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT