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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCGGCGGCGATCGTTCGGTAGTTTCATTGCAGgtgagtaagtctcactcttttcctcttccgctcgatctctttatgccttgtttggagattggatggtggttgccaagagagtggaaggaaatgaaaggaa...

Basic information

species Vitis vinifera
transcript Vv12s0134g00150.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349826932|gb|FQ419023.1|FQ419023
EST:     GCCGGCGGCGATCGTTCGGTAGTTTCATTGCAG                         GTTACGGATGATACAACAAGCCTCAATTGTATGTATCTTGTAATCCCGGAG
genomic: GCCGGCGGCGATCGTTCGGTAGTTTCATTGCAGgtgagtaagt ... tttctgatagGTTACGGATGATACAACAAGCCTCAATTGTATGTAGCTTGTAATCCCGGAG
EST: gi|161712241|gb|FC061615.1|FC061615
EST:     GCCGGCGGCGATCGTTCGGTAGTTTCATTGCAG                         GTTACGGATGATACAACAAGCCTCAATTGTATGTATCTTGTAATCCCGGAG
genomic: GCCGGCGGCGATCGTTCGGTAGTTTCATTGCAGgtgagtaagt ... tttctgatagGTTACGGATGATACAACAAGCCTCAATTGTATGTAGCTTGTAATCCCGGAG
EST: gi|351032822|gb|FQ461711.1|FQ461711
EST:     GCCGGCGGCGATCGTTCGGTAGTTTCATTGCAG                         GTTACGGATGATACAACAAGCCTCAATTGTATGTATCTTGTAATCCCGGAG
genomic: GCCGGCGGCGATCGTTCGGTAGTTTCATTGCAGgtgagtaagt ... tttctgatagGTTACGGATGATACAACAAGCCTCAATTGTATGTAGCTTGTAATCCCGGAG
EST: gi|349810206|gb|FQ401652.1|FQ401652
EST:     GCCGGCGGCGATCGTTCGGTAGTTTCATTGCAG                         GTTACGGATGATACAACAAGCCTCAATTGTATGTATCTTGTAATCCCGGAG
genomic: GCCGGCGGCGATCGTTCGGTAGTTTCATTGCAGgtgagtaagt ... tttctgatagGTTACGGATGATACAACAAGCCTCAATTGTATGTAGCTTGTAATCCCGGAG
EST: gi|161721200|gb|FC071051.1|FC071051
EST:     TCGTTGGGTAGTTTCATTGCAG                         GTTACGGATGATACAACAAGCCTCAATTGTATGTAGCTTGTAATCCCGGAG
genomic: TCGTTCGGTAGTTTCATTGCAGgtgagtaagt ... tttctgatagGTTACGGATGATACAACAAGCCTCAATTGTATGTAGCTTGTAATCCCGGAG
EST: gi|349817650|gb|FQ407639.1|FQ407639
EST:     GCCGGCGGCGATCGTTCGGTAGTTTCATTGCAG                         GTTACGGATGATACAACAAGCCTCAATTGTATGTATCTTGTAATCCCGGAG
genomic: GCCGGCGGCGATCGTTCGGTAGTTTCATTGCAGgtgagtaagt ... tttctgatagGTTACGGATGATACAACAAGCCTCAATTGTATGTAGCTTGTAATCCCGGAG
EST: gi|349809279|gb|FQ399053.1|FQ399053
EST:     GCCGGCGGCGATCGTTCGGTAGTTTCATTGCAG                         GTTACGGATGATACAACAAGCCTCAATTGTATGTATCTTGTAATCCCGGAG
genomic: GCCGGCGGCGATCGTTCGGTAGTTTCATTGCAGgtgagtaagt ... tttctgatagGTTACGGATGATACAACAAGCCTCAATTGTATGTAGCTTGTAATCCCGGAG
EST: gi|351015754|gb|FQ431709.1|FQ431709
EST:     GCCGGCGGCGATCGTTCGGTAGTTTCATTGCAG                         GTTACGGATGATACAACAAGCCTCAATTGTATGTATCTTGTAATCCCGGAG
genomic: GCCGGCGGCGATCGTTCGGTAGTTTCATTGCAGgtgagtaagt ... tttctgatagGTTACGGATGATACAACAAGCCTCAATTGTATGTAGCTTGTAATCCCGGAG
EST: gi|351045119|gb|FQ449373.1|FQ449373
EST:     GCCGGCGGCGATCGTTCGGTAGTTTCATTGCAG                         GTTACGGATGATACAACAAGCCTCAATTGTATGTATCTTGTAATCCCGGAG
genomic: GCCGGCGGCGATCGTTCGGTAGTTTCATTGCAGgtgagtaagt ... tttctgatagGTTACGGATGATACAACAAGCCTCAATTGTATGTAGCTTGTAATCCCGGAG
EST: gi|349815323|gb|FQ400478.1|FQ400478
EST:     GCCGGCGGCGATCGTTCGGTAGTTTCATTGCAG                         GTTACGGATGATACAACAAGCCTCAATTGTATGTATCTTGTAATCCCGGAG
genomic: GCCGGCGGCGATCGTTCGGTAGTTTCATTGCAGgtgagtaagt ... tttctgatagGTTACGGATGATACAACAAGCCTCAATTGTATGTAGCTTGTAATCCCGGAG
EST: gi|349807995|gb|FQ402386.1|FQ402386
EST:     GCCGGCGGCGATCGTTCGGTAGTTTCATTGCAG                         GTTACGGATGATACAACAAGCCTCAATTGTATGTATCTTGTAATCCCGGAG
genomic: GCCGGCGGCGATCGTTCGGTAGTTTCATTGCAGgtgagtaagt ... tttctgatagGTTACGGATGATACAACAAGCCTCAATTGTATGTAGCTTGTAATCCCGGAG
EST: gi|351045348|gb|FQ451796.1|FQ451796
EST:     GCCGGCGGCGATCGTTCGGTAGTTTCATTGCAG                         GTTACGGATGATACAACAAGCCTCAATTGTATGTATCTTGTAATCCCGGAG
genomic: GCCGGCGGCGATCGTTCGGTAGTTTCATTGCAGgtgagtaagt ... tttctgatagGTTACGGATGATACAACAAGCCTCAATTGTATGTAGCTTGTAATCCCGGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCCGGCGGCGATCGTTCGGTAGTTTCATTGCAGgtgagtaagtctcactcttttcctcttccgctcgatctctttatgccttgtttggagattggatggtggttgccaagagagtggaaggaaatgaaaggaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctcactc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagagag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aggaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaagga