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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACCTCTCTCTGAATCTCCAGATCTCTGCTTTTGCCCTCTCCCATGGCCGGCCGTTACGAAAGTAACCCTTTTGACGAAGAAGATGTGAATCCATTCGCGgtgagtctggaatctattccgatctccagtgtttgatgagttctgctcagatgaacgattgtttttttttatttttttttattttgtattttcttttttg...

Basic information

species Vitis vinifera
transcript Vv12s0059g01930.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27584710|gb|CB007405.1|CB007405
EST:     GCCGTTATGAAAGTAACCCTTTTGACGAAGAAGACGTGAATCCATTCGCG                         AACCCTGGTAGTGTCCCCCCTGCAGCCAACTCTAGGCTTTCACCACTCCCC
genomic: GCCGTTACGAAAGTAACCCTTTTGACGAAGAAGATGTGAATCCATTCGCGgtgagtctgg ... agattgccagAACCCTGGTAGTGTCCCCCCTGCAGCCAACTCTAGGCTTTCACCACTCCCC
EST: gi|349811810|gb|FQ410607.1|FQ410607
EST:     GCCGTTATGAAAGTAACCCTTTTGACGAAGAAGACGTGAATCCATTCGCG                         AACCCTGGTAGTGTCCCCCCTGCAGCCAACTCTAGGCTTTCACCACTCCCC
genomic: GCCGTTACGAAAGTAACCCTTTTGACGAAGAAGATGTGAATCCATTCGCGgtgagtctgg ... agattgccagAACCCTGGTAGTGTCCCCCCTGCAGCCAACTCTAGGCTTTCACCACTCCCC
EST: gi|27586086|gb|CB008781.1|CB008781
EST:     GCCGTTATGAAAGTAACCCTTTTGACGAAGAAGACGTGAATCCATTCGCG                         AACCCTGGTAGTGTCCCCCCTGCAGCCAACTCTAGGCTTTCACCACTCCCC
genomic: GCCGTTACGAAAGTAACCCTTTTGACGAAGAAGATGTGAATCCATTCGCGgtgagtctgg ... agattgccagAACCCTGGTAGTGTCCCCCCTGCAGCCAACTCTAGGCTTTCACCACTCCCC
EST: gi|161710771|gb|FC059854.1|FC059854
EST:     GCCGTTATGAAAGTAACCCTTTTGACGAAGAAGACGTGAATCCATTCGCG                         AACCCTGGTAGTGTCCCCCCTGCAGCCAACTCTAGGCTTTCACCACTCCCC
genomic: GCCGTTACGAAAGTAACCCTTTTGACGAAGAAGATGTGAATCCATTCGCGgtgagtctgg ... agattgccagAACCCTGGTAGTGTCCCCCCTGCAGCCAACTCTAGGCTTTCACCACTCCCC
EST: gi|71884369|gb|DT033424.1|DT033424
EST:     GCCGTTATGAAAGTAACCCTTTTGACGAAGAAGACGTGAATCCATTCGCG                         AACCCTGGTAGTGTCCCCCCTGCAGCCAACTCTAGGCTTTCACCACTCCCC
genomic: GCCGTTACGAAAGTAACCCTTTTGACGAAGAAGATGTGAATCCATTCGCGgtgagtctgg ... agattgccagAACCCTGGTAGTGTCCCCCCTGCAGCCAACTCTAGGCTTTCACCACTCCCC
EST: gi|27584919|gb|CB007614.1|CB007614
EST:     GCCGTTATGAAAGTAACCCTTTTGACGAAGAAGACGTGAATCCATTCGCG                         AACCCTGGTAGTGTCCCCCCTGCAGCCAACTCTAGGCTTTCACCACTCCCC
genomic: GCCGTTACGAAAGTAACCCTTTTGACGAAGAAGATGTGAATCCATTCGCGgtgagtctgg ... agattgccagAACCCTGGTAGTGTCCCCCCTGCAGCCAACTCTAGGCTTTCACCACTCCCC
EST: gi|110376126|gb|EC941168.1|EC941168
EST:     GCCGTTACGAAAGTAACCCTTTTGACGAAGAAGATGTGAATCCATTCGCG                         AACCCTGGTAGTGTCCCCCCTGCAGCCAACTCTAGGCTTTCACCACTCCCC
genomic: GCCGTTACGAAAGTAACCCTTTTGACGAAGAAGATGTGAATCCATTCGCGgtgagtctgg ... agattgccagAACCCTGGTAGTGTCCCCCCTGCAGCCAACTCTAGGCTTTCACCACTCCCC
EST: gi|110357026|gb|EC920280.1|EC920280
EST:     GCCGTTATGAAAGTAACCCTTTTGACGAAGAAGACGTGAATCCATTCGCG                         AACCCTGGTAGTGTCCCCCCTGCAGCCAACTCTAGGCTTTCACCACTCCCC
genomic: GCCGTTACGAAAGTAACCCTTTTGACGAAGAAGATGTGAATCCATTCGCGgtgagtctgg ... agattgccagAACCCTGGTAGTGTCCCCCCTGCAGCCAACTCTAGGCTTTCACCACTCCCC
EST: gi|110699817|gb|EE077160.1|EE077160
EST:     GCCGTTACGAAAGTAACCCTTTTGACGAAGAAGATGTGAATCCATTCGCG                         AACCCTGGTAGTGTACCCCCTGCAGCCAACTCTAGGCTTTCACCACTCCCC
genomic: GCCGTTACGAAAGTAACCCTTTTGACGAAGAAGATGTGAATCCATTCGCGgtgagtctgg ... agattgccagAACCCTGGTAGTGTCCCCCCTGCAGCCAACTCTAGGCTTTCACCACTCCCC
EST: gi|161710538|gb|FC060684.1|FC060684
EST:     GCCGTTATGAAAGTAACCCTTTTGACGAAGAAGACGTGAATCCATTCGCG                         AACCCTGGTAGTGTCCCCCCTGCAGCCCAACTCTAGGCTTTCACCACTCCC
genomic: GCCGTTACGAAAGTAACCCTTTTGACGAAGAAGATGTGAATCCATTCGCGgtgagtctgg ... agattgccagAACCCTGGTAGTGTCCCCCCTGCAGCC-AACTCTAGGCTTTCACCACTCCC
EST: gi|110722937|gb|EE099679.1|EE099679
EST:     GCCGTTACGAAAGTAACCCTTTTGACGAAGAAGATGTGAATCCATTCGCG                         AACCCTGGTAGTGTACCCCCTGCAGCCAACTCTAGGCTTTCACCACTCCCC
genomic: GCCGTTACGAAAGTAACCCTTTTGACGAAGAAGATGTGAATCCATTCGCGgtgagtctgg ... agattgccagAACCCTGGTAGTGTCCCCCCTGCAGCCAACTCTAGGCTTTCACCACTCCCC
EST: gi|110722049|gb|EE097937.1|EE097937
EST:     GCCGTTACGAAAGTAACCCTTTTGACGAAGAAGATGTGAATCCATTCGCG                         AACCCTGGTAGTGTCCCCCCTGCAGCCAACTCTAGGCTTTCACCACTCCCC
genomic: GCCGTTACGAAAGTAACCCTTTTGACGAAGAAGATGTGAATCCATTCGCGgtgagtctgg ... agattgccagAACCCTGGTAGTGTCCCCCCTGCAGCCAACTCTAGGCTTTCACCACTCCCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CACCTCTCTCTGAATCTCCAGATCTCTGCTTTTGCCCTCTCCCATGGCCGGCCGTTACGAAAGTAACCCTTTTGACGAAGAAGATGTGAATCCATTCGCGgtgagtctggaatctattccgatctccagtgtttgatgagttctgctcagatgaacgattgtttttttttatttttttttattttgtattttcttttttg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG