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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCAGGCACCACTTGTAATTTGAGCATGAATTGGCATTATTCTTATAATACTTGGTTCGTGCCCGTCGAAATTTCGGATAGTGGGACCGCCCAAGTTCAGgtataagtgagtaattttgaagttgggattgaattttgtcaatttcgttgttgttttgctttgtgatttgttgggtttgtttttgttttgggcatacgca...

Basic information

species Vitis vinifera
transcript Vv12s0059g01680.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0059g01680.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA02G43390.1 (Glycine max), 5'ss of exon 1
------CTCAGGCACCACTTGTAATTTGAGCATGAATTGGCATTATTCTTATAATACTTGGTTCGTGCCCGTCGAAATTTCGGATAGTGGGACCGCCCAAGTTCAGgtataagtgagtaattttgaagttgggattgaattttgtcaatttcgttgttgtttt---gctttgtgatttg--ttgggtttgtttttgttttgggcatacgca
       || ||    ||||||||||||||||| |||||| |||| ||||||| ||| ||||| ||||| ||  | |  || || || |  |  ||  ||||||||| || |   | | ||  |  | ||    || |  |||||  |   |||| || |||    | |||    ||    | ||| |  || || || |           
AATAGCTTCTGGGGTTACTTGTAATTTGAGCATCAATTGGTATTACTCTTATAGTACATGGTTTGTGCCTGTTAAGACATCTGACAGAGATAGGGCAGAAgttcaggcatgaa--attgatcctttatttttttttta--tttgttcaggacgtttttatttataagatttaaatttaaaatagggatgattctttttataaaa-------

upper sequence: Vv12s0059g01680.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA14G05590.1 (Glycine max), 5'ss of exon 1
CTCAGGCACCACTTGTAATTTGAGCATGAATTGGCATTATTCTTATAATACTTGGTTCGTGCCCGTCGAAATTTCGGATAGTGGGACCGCCCAAGTTCAGgtataag-----tgagtaattttgaagttgggattgaattttgtcaatttcgttgttgttttgctttgtgatttgttgggtttgtttttgttttgggcatacgca
 || ||    |||||||||||||| ||||||||| |||| ||||||| ||| ||| | ||||| ||  | || || || || || |  ||  |||||||||||| |      |   | ||||||    ||    | ||    |   ||||  ||    |     ||     ||  ||     |||  |    ||    ||     
TTCTGGGGTTACTTGTAATTTGAGTATGAATTGGTATTACTCTTATAGTACATGGCTTGTGCCTGTTAAGATCTCTGACAGAGGTAGAGCAGAAGTTCAGgtatgaaatttttcctttattttgtttgtgtatataaagagagaagatttaattagaatgcaatttcaaagttattttacactgtcctccaattaaagat-----

upper sequence: Vv12s0059g01680.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT1G04970.1 (Arabidopsis thaliana), 5'ss of exon 1
CTCAGGCACCACTTGTAATTTGAGCATGAATTGGCATTATTCTTATAATACTTGGTTCGTGCCCGTCGAAATTTCGGATAGTGGGACCGCCCAAGTTCAGgtataagtgagtaattttgaagttgggattgaattttgtcaatttcgttgttgttttgctttgtgatttgttgggtttgtttttgttttgggcatacgca---
 ||||| || |||||||||||||| |||||||||||||||||||| | ||||||| |    ||  | ||||| || |||   || |  ||    |||||||||    |||  ||||||     |     | | |||||   || ||  | ||||    |  ||  |      |  |||  ||  |  |     ||        
TTCAGGGACGACTTGTAATTTGAGTATGAATTGGCATTATTCTTACAGTACTTGGCTTCCTCCTATTGAAATATCTGATCAGGGTATTGCATCTGTTCAGgtaattatgatcaatttta---ctaattcttagttttgatcatctcaatcttgtgaatcaatggaaagacaagatttttcttgcgaatcacaaatttctgttc