1 5' 3' | 2 5' 3' | 3 5' 3' |
GGCCTTCCCTGTGATCAACATGGAGATGCTCAATGGTGAGGAGAGAGGAGCCACCATGGAGATGATCAAAGATGCCTGTGAGAACTGGGGTTTCTTCGAGgtaaggatatataaatgcttcttccagaaaccactaagtgtctgttaaactgttccattacttatgatgtctttctttttgtatgtggataaccatag
species | Vitis vinifera |
transcript | Vv12s0059g01380.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCACCATGGAGATGATCAAAGATTCCTGTGAGAACTGGGGTTTCTTTGAG TTGGTGAATCATGGAATCTCTCATGAGCAAATGGACGCTGTGGAAAAATTGEST: gi|161716106|gb|FC068055.1|FC068055
genomic: CCACCATGGAGATGATCAAAGATGCCTGTGAGAACTGGGGTTTCTTCGAGgtaaggatat ... ataaccatagTTGGTGAATCATGGAATCTCTCATGAGCAAATGGACGCTGTGGAAAAATTG
EST: CCACCATGGAGATGATCAAAGATGCCTGTGAGAACTGGGGTTTCTTTGAG TTGGTGAATCATGGAATCTCTCATGAGCAAATGGACGCTGTGGAAAAATTGEST: gi|30252772|gb|CB970323.1|CB970323
genomic: CCACCATGGAGATGATCAAAGATGCCTGTGAGAACTGGGGTTTCTTCGAGgtaaggatat ... ataaccatagTTGGTGAATCATGGAATCTCTCATGAGCAAATGGACGCTGTGGAAAAATTG
EST: CCACCATGGAGACGATCAAAGATGCCTGTGAGAACTGGGGTTTCTTTGAG TTGGTGAATCATGGAATCTCTCATGAGCAAATGGACGCTGTGGAAAAATTGEST: gi|351054949|gb|FQ440288.1|FQ440288
genomic: CCACCATGGAGATGATCAAAGATGCCTGTGAGAACTGGGGTTTCTTCGAGgtaaggatat ... ataaccatagTTGGTGAATCATGGAATCTCTCATGAGCAAATGGACGCTGTGGAAAAATTG
EST: CCACCATGGAGATGATCAAGGATGCCTGTGAGAACTGGGGTCTCTTCGAG TTGGCGAATCATGGAATCTCTCATGAGCAAATGGACGCTGTGGAAAAATTGEST: gi|351022691|gb|FQ428600.1|FQ428600
genomic: CCACCATGGAGATGATCAAAGATGCCTGTGAGAACTGGGGTTTCTTCGAGgtaaggatat ... ataaccatagTTGGTGAATCATGGAATCTCTCATGAGCAAATGGACGCTGTGGAAAAATTG
EST: CCACCATGGAGATGATCAAAGATGCCTGTGAGAACTGGGGTTTCTTCGAG TTGGTGAATCATGGAATCTCTCATGAGCAAATGGACGCTGTGGAAAAATTGEST: gi|161714036|gb|FC064111.1|FC064111
genomic: CCACCATGGAGATGATCAAAGATGCCTGTGAGAACTGGGGTTTCTTCGAGgtaaggatat ... ataaccatagTTGGTGAATCATGGAATCTCTCATGAGCAAATGGACGCTGTGGAAAAATTG
EST: CCACCATGGAGATGATCAAAGATGCCTGTGAGAACTGGGGTTTCTTCGAG TTGGTGAATCATGGAATCTCTCATGAGCAAATGGACGCTGTGGAAAAATTGEST: gi|349832706|gb|FQ422064.1|FQ422064
genomic: CCACCATGGAGATGATCAAAGATGCCTGTGAGAACTGGGGTTTCTTCGAGgtaaggatat ... ataaccatagTTGGTGAATCATGGAATCTCTCATGAGCAAATGGACGCTGTGGAAAAATTG
EST: CCACCATGGAGATGATCAAAGATTCCTGTGAGAACTGGGGTTTCTTTGAG TTGGTGAATCATGGAATCTCTCATGAGCAAATGGACGCTGTGGAAAAATTGEST: gi|161714262|gb|FC064159.1|FC064159
genomic: CCACCATGGAGATGATCAAAGATGCCTGTGAGAACTGGGGTTTCTTCGAGgtaaggatat ... ataaccatagTTGGTGAATCATGGAATCTCTCATGAGCAAATGGACGCTGTGGAAAAATTG
EST: CCACCATGGAGATGATCAAAGATGCCTGTGAGAACTGGGGTTTCTTTGAG TTGGTGAATCATGGAATCTCTCATGAGCAAATGGACGCTGTGGAAAAATTGEST: gi|161718648|gb|FC068224.1|FC068224
genomic: CCACCATGGAGATGATCAAAGATGCCTGTGAGAACTGGGGTTTCTTCGAGgtaaggatat ... ataaccatagTTGGTGAATCATGGAATCTCTCATGAGCAAATGGACGCTGTGGAAAAATTG
EST: CCACCATGGAGATGATCAAAGATGCCTGTGAGAACTGGGGTTTCTTCGAG TTGGTGAATCATGGAATCTCTCATGAGCAAATGGACGCTGTGGAAAAATTGEST: gi|30256251|gb|CB972094.1|CB972094
genomic: CCACCATGGAGATGATCAAAGATGCCTGTGAGAACTGGGGTTTCTTCGAGgtaaggatat ... ataaccatagTTGGTGAATCATGGAATCTCTCATGAGCAAATGGACGCTGTGGAAAAATTG
EST: CCACCATGGAGATGATCAAAGATGCCTGTGAGAACTGGGGTTTCTTTGAG TTGGTGAATCATGGAATCTCTCATGAGCAAATGGACGCTGTGGAAAAATTGEST: gi|110700838|gb|EE077845.1|EE077845
genomic: CCACCATGGAGATGATCAAAGATGCCTGTGAGAACTGGGGTTTCTTCGAGgtaaggatat ... ataaccatagTTGGTGAATCATGGAATCTCTCATGAGCAAATGGACGCTGTGGAAAAATTG
EST: CCACCATGGAGATGATCAAAGATGCCTGTGAGAACTGGGGTTTCTTCGAG TTGGTGAATCATGGAATCTCTCATGAGCAAATGGACGCTGTGGAAAAATTGEST: gi|161707767|gb|FC056432.1|FC056432
genomic: CCACCATGGAGATGATCAAAGATGCCTGTGAGAACTGGGGTTTCTTCGAGgtaaggatat ... ataaccatagTTGGTGAATCATGGAATCTCTCATGAGCAAATGGACGCTGTGGAAAAATTG
EST: CCACCATGGAGATGATCAAAGATGCCTGTGAGAACTGGGGTTTCTTTGAG TTGGTGAATCATGGAATCTCTCATGAGCAAATGGACGCTGTGGAAAAATTGEST: gi|110688626|gb|EE067394.1|EE067394
genomic: CCACCATGGAGATGATCAAAGATGCCTGTGAGAACTGGGGTTTCTTCGAGgtaaggatat ... ataaccatagTTGGTGAATCATGGAATCTCTCATGAGCAAATGGACGCTGTGGAAAAATTG
EST: CCACCATGGAGATGATCAAAGATGCCTGTGAGAACTGGGGTTTCTTCGAG TTGGTGAATCATGGAATCTCTCATGAGCAAATGGACGCTGTGGAAAAATTGEST: gi|351055645|gb|FQ452110.1|FQ452110
genomic: CCACCATGGAGATGATCAAAGATGCCTGTGAGAACTGGGGTTTCTTCGAGgtaaggatat ... ataaccatagTTGGTGAATCATGGAATCTCTCATGAGCAAATGGACGCTGTGGAAAAATTG
EST: CCACCATGGAGATGATCAAGGATGCCTGTGAGAACTGGGGTTTCTTCGAG TTGGCGAATCATGGAATCTCTCATGAGCAAATGGACGCTGTGGAAAAATTGEST: gi|161720595|gb|FC069917.1|FC069917
genomic: CCACCATGGAGATGATCAAAGATGCCTGTGAGAACTGGGGTTTCTTCGAGgtaaggatat ... ataaccatagTTGGTGAATCATGGAATCTCTCATGAGCAAATGGACGCTGTGGAAAAATTG
EST: CCACCATGGAGATGATCAAAGATGCCTGTGAGAACTGGGGTTTCTTCGAG TTGGTGAATCATGGAATCTCTCATGAGCAAATGGACGCTGTGGAAAAATTGEST: gi|161713229|gb|FC063069.1|FC063069
genomic: CCACCATGGAGATGATCAAAGATGCCTGTGAGAACTGGGGTTTCTTCGAGgtaaggatat ... ataaccatagTTGGTGAATCATGGAATCTCTCATGAGCAAATGGACGCTGTGGAAAAATTG
EST: CCACCATGGAGATGATCAAAGATGCCTGTGAGAACTGGGGTTTCTTTGAG TTGGTGAATCATGGAATCTCTCATGAGCAAATGGACGCTGTGGAAAAATTGEST: gi|161710874|gb|FC058572.1|FC058572
genomic: CCACCATGGAGATGATCAAAGATGCCTGTGAGAACTGGGGTTTCTTCGAGgtaaggatat ... ataaccatagTTGGTGAATCATGGAATCTCTCATGAGCAAATGGACGCTGTGGAAAAATTG
EST: CCACCATGGAGATGATCAAAGATGCCTGTGAGAACTGGGGTTTCTTCGAG TTGGTGAATCATGGAATCTCTCATGAGCAAATGGACGCTGTGGAAAAATTG
genomic: CCACCATGGAGATGATCAAAGATGCCTGTGAGAACTGGGGTTTCTTCGAGgtaaggatat ... ataaccatagTTGGTGAATCATGGAATCTCTCATGAGCAAATGGACGCTGTGGAAAAATTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCCTTCCCTGTGATCAACATGGAGATGCTCAATGGTGAGGAGAGAGGAGCCACCATGGAGATGATCAAAGATGCCTGTGAGAACTGGGGTTTCTTCGAGgtaaggatatataaatgcttcttccagaaaccactaagtgtctgttaaactgttccattacttatgatgtctttctttttgtatgtggataaccatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG