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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTTTGTGAATCTTACAACCCCATTCATGGCCAAGACCAAGCCTGGCAAAAAGGACTTGGATTCTTACACCATCAAGGGCACCAACAAGGTTGTTAGAGgtgaggcttcttttttttttttctgttggcttgtgcatgtggaatctgaatctctggtttttgttttgatttacctgctggttggttgctccgagaactg...

Basic information

species Vitis vinifera
transcript Vv12s0059g01180.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0059g01180.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os09g21770.1 (Oryza sativa), 5'ss of exon 1
TTCTTTGTGAATCTTACAACCCCATTCATGGCCAAGACCAAGCCTGGCAAAAAGGACTTGGATTCTTACACCATCAAGGGCACCAACAAGGTTGTTAGAGgtg-aggcttcttttttttttttctgttggcttgtgcatgtggaatctgaatctctggtttttgttttgatttacctgctggttggttgctccgagaactg
 |||  |     ||  ||| ||| | |||||||||||||||||  ||||| |||||| | || || ||||||||||||||||||| |||| | ||  |||||   |||  ||| |   ||| |   ||      | |       || ||  |||||  ||  | | || ||     |    | |||| |    ||      
CTCTAGGGTTTCCTCCCAATCCCCTCCATGGCCAAGACCAAGCAGGGCAAGAAGGACGTCGAATCCTACACCATCAAGGGCACCACCAAGATCGTCCGAGgtacgggccgcttctcgctttcttcatt------tccggccaagatttgggtctct--ttagtttcttcatgagggtttgtggtggtggtgtggaag----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161705911|gb|FC055373.1|FC055373
EST:     AAAGGACTTGGATTCTTACACCATCAAGGGCACCAACAATTTTGTTAGAG                         CTGGAGATTGTGTGCTAATGCGACCATCAGACTCTGATAAGCCTCCCTATG
genomic: AAAGGACTTGGATTCTTACACCATCAAGGGCACCAACAAGGTTGTTAGAGgtgaggcttc ... tggttggcagCTGGAGATTGTGTGCTAATGCGACCATCAGACTCTGATAAGCCTCCCTATG
EST: gi|161714986|gb|FC062715.1|FC062715
EST:     AAAGGACTTGGATTCTTACACCATCAAGGGCACCAACAAGGTTGTTAGAG                         CTGGAGATTGTGTGCTAATGCGACCATCAGACTCTGATAAGCCTCCCTATG
genomic: AAAGGACTTGGATTCTTACACCATCAAGGGCACCAACAAGGTTGTTAGAGgtgaggcttc ... tggttggcagCTGGAGATTGTGTGCTAATGCGACCATCAGACTCTGATAAGCCTCCCTATG
EST: gi|351025186|gb|FQ433603.1|FQ433603
EST:     AAAGGACTTGGATTCTTACACCATCAAGGGCACCAACAAGGTTGTTAGAG                         CTGGAGATTGTGTGCTAATGCGACCATCAGACTCTGATAAGCCTCCCTATG
genomic: AAAGGACTTGGATTCTTACACCATCAAGGGCACCAACAAGGTTGTTAGAGgtgaggcttc ... tggttggcagCTGGAGATTGTGTGCTAATGCGACCATCAGACTCTGATAAGCCTCCCTATG