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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATTATGGCATCTCCCAGGGCCCATCACTGCAGAGAAGAAGGCAGAGAGCTCTCAGGACCGTGTGCTTGCAGACACAAGCCCTTCCCTCCAGAACCCAGgtaccctttttcttcaactctctctggttccactcaaaatggttgctagaaaatttccatggagaataataactctgggcttccttcatttcctggaaat...

Basic information

species Vitis vinifera
transcript Vv12s0059g01150.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110390413|gb|EC955321.1|EC955321
EST:     CTCTCAGGACCGTGTGCTTGCAGACACAAGCCCTTCCCTCCAGAACCCAG                         AGGATAATGGAGAGTATATCCGTAAGTGGGGAAGTGGGTGGTGCTGGTGGA
genomic: CTCTCAGGACCGTGTGCTTGCAGACACAAGCCCTTCCCTCCAGAACCCAGgtaccctttt ... aatgttgtagAGGATAATGGAGAGTATATCTGTAAGTGGGGAAGTGGGTGGTGCTGGTGGA
EST: gi|110384112|gb|EC948528.1|EC948528
EST:     CTCTCAGGACCGTGTGCTTGCAGACACAAGCCCTTCCCTCCAGAACCCAG                         AGGATAATGGAGAGTATATCCGTAAGTGGGGAAGTGGGTGGTGCTGGTGGA
genomic: CTCTCAGGACCGTGTGCTTGCAGACACAAGCCCTTCCCTCCAGAACCCAGgtaccctttt ... aatgttgtagAGGATAATGGAGAGTATATCTGTAAGTGGGGAAGTGGGTGGTGCTGGTGGA
EST: gi|26258630|gb|CA809693.1|CA809693
EST:     CTCTCAGGACCGTGTGCTTGCAGACACAAGCCCTTCCCTCCAGAACCCAG                         AGGATAATGGAGAGTATATCCGTAAGTGGGGAAGTGGGTGGTGCTGGTGGA
genomic: CTCTCAGGACCGTGTGCTTGCAGACACAAGCCCTTCCCTCCAGAACCCAGgtaccctttt ... aatgttgtagAGGATAATGGAGAGTATATCTGTAAGTGGGGAAGTGGGTGGTGCTGGTGGA
EST: gi|110712999|gb|EE088546.1|EE088546
EST:     CTCCCAGGACCGTGTGCTTGCAGACACAAGCCCTTCCCTCCAGAACCCAG                         AGGATAATGGAGAGTATATCTGTAAGTGGGGAAGTGGGTGGTGCTGGTGGA
genomic: CTCTCAGGACCGTGTGCTTGCAGACACAAGCCCTTCCCTCCAGAACCCAGgtaccctttt ... aatgttgtagAGGATAATGGAGAGTATATCTGTAAGTGGGGAAGTGGGTGGTGCTGGTGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAATTATGGCATCTCCCAGGGCCCATCACTGCAGAGAAGAAGGCAGAGAGCTCTCAGGACCGTGTGCTTGCAGACACAAGCCCTTCCCTCCAGAACCCAGgtaccctttttcttcaactctctctggttccactcaaaatggttgctagaaaatttccatggagaataataactctgggcttccttcatttcctggaaat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctggaaa