Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTAGAGCAGTACAAAAGCTCCAACTAGGACAGACAATTAAGTGTCATGGCTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAGgtctcttagcaacttctgggttttcttcctcagcaatttcttcttctgagttttccttatttgagttttctaatttaaatggagtgttatgttgacag

Basic information

species Vitis vinifera
transcript Vv12s0059g00270.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351052318|gb|FQ455490.1|FQ455490
EST:     CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAG                         GGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGGAGTTTCAGTA
genomic: CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAGgtctcttagc ... atgttgacagGGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGAAGTTTCAGTA
EST: gi|349825727|gb|FQ421826.1|FQ421826
EST:     CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAG                         GGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGGAGTTTCAGTA
genomic: CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAGgtctcttagc ... atgttgacagGGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGAAGTTTCAGTA
EST: gi|110708322|gb|EE085731.1|EE085731
EST:     CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAG                         GGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGGAGTTTCAGTA
genomic: CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAGgtctcttagc ... atgttgacagGGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGAAGTTTCAGTA
EST: gi|351036975|gb|FQ459497.1|FQ459497
EST:     CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAG                         GGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGGAGTTTCAGTA
genomic: CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAGgtctcttagc ... atgttgacagGGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGAAGTTTCAGTA
EST: gi|351024357|gb|FQ423780.1|FQ423780
EST:     CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAG                         GGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGGAGTTTCAGTA
genomic: CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAGgtctcttagc ... atgttgacagGGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGAAGTTTCAGTA
EST: gi|351019797|gb|FQ439614.1|FQ439614
EST:     CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAG                         GGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGGAGTTTCAGTA
genomic: CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAGgtctcttagc ... atgttgacagGGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGAAGTTTCAGTA
EST: gi|352790469|gb|FQ478109.1|FQ478109
EST:     CCCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAG                         GGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGGAGTTTCAGTA
genomic: CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAGgtctcttagc ... atgttgacagGGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGAAGTTTCAGTA
EST: gi|351035860|gb|FQ463705.1|FQ463705
EST:     CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAG                         GGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGGAGTTTCAGTA
genomic: CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAGgtctcttagc ... atgttgacagGGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGAAGTTTCAGTA
EST: gi|351046018|gb|FQ441401.1|FQ441401
EST:     CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAG                         GGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGGAGTTTCAGTA
genomic: CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAGgtctcttagc ... atgttgacagGGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGAAGTTTCAGTA
EST: gi|349826737|gb|FQ418828.1|FQ418828
EST:     CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAG                         GGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGGAGTTTCAGTA
genomic: CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAGgtctcttagc ... atgttgacagGGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGAAGTTTCAGTA
EST: gi|351040767|gb|FQ438311.1|FQ438311
EST:     CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAG                         GGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGGAGTTTCAGTA
genomic: CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAGgtctcttagc ... atgttgacagGGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGAAGTTTCAGTA
EST: gi|351046996|gb|FQ454606.1|FQ454606
EST:     CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAG                         GGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGGAGTTTCAGTA
genomic: CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAGgtctcttagc ... atgttgacagGGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGAAGTTTCAGTA
EST: gi|352790521|gb|FQ478161.1|FQ478161
EST:     CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAG                         GGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGGAGTTTCAGTA
genomic: CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAGgtctcttagc ... atgttgacagGGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGAAGTTTCAGTA
EST: gi|351029565|gb|FQ427405.1|FQ427405
EST:     CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAG                         GGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGGAGTTTCAGTA
genomic: CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAGgtctcttagc ... atgttgacagGGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGAAGTTTCAGTA
EST: gi|352798550|gb|FQ480575.1|FQ480575
EST:     CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAG                         GGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGGAGTTTCAGTA
genomic: CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAGgtctcttagc ... atgttgacagGGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGAAGTTTCAGTA
EST: gi|351045658|gb|FQ440843.1|FQ440843
EST:     CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAG                         GGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGGAGTTTCAGTA
genomic: CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAGgtctcttagc ... atgttgacagGGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGAAGTTTCAGTA
EST: gi|349809574|gb|FQ414464.1|FQ414464
EST:     CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAG                         GGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGGAGTTTCAGTA
genomic: CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAGgtctcttagc ... atgttgacagGGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGAAGTTTCAGTA
EST: gi|351048713|gb|FQ449383.1|FQ449383
EST:     CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAG                         GGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGGAGTTTCAGTA
genomic: CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAGgtctcttagc ... atgttgacagGGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGAAGTTTCAGTA
EST: gi|351052941|gb|FQ453928.1|FQ453928
EST:     CCCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAG                         GGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGGAGTTTCAGTA
genomic: CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAGgtctcttagc ... atgttgacagGGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGAAGTTTCAGTA
EST: gi|351015379|gb|FQ447208.1|FQ447208
EST:     CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAG                         GGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGGAGTTTCAGTA
genomic: CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAGgtctcttagc ... atgttgacagGGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGAAGTTTCAGTA
EST: gi|351053123|gb|FQ455580.1|FQ455580
EST:     CCCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAG                         GGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGGAGTTTCAGTA
genomic: CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAGgtctcttagc ... atgttgacagGGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGAAGTTTCAGTA
EST: gi|351051565|gb|FQ450117.1|FQ450117
EST:     CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAG                         GGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGGAGTTTCAGTA
genomic: CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAGgtctcttagc ... atgttgacagGGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGAAGTTTCAGTA
EST: gi|352786826|gb|FQ481201.1|FQ481201
EST:     CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAG                         GGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGGAGTTTCAGTA
genomic: CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAGgtctcttagc ... atgttgacagGGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGAAGTTTCAGTA
EST: gi|351032378|gb|FQ461631.1|FQ461631
EST:     CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAG                         GGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTCCTTTGGAGTTTCAGTA
genomic: CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAGgtctcttagc ... atgttgacagGGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGAAGTTTCAGTA
EST: gi|349821422|gb|FQ411043.1|FQ411043
EST:     CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAG                         GGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGGAGTTTCAGTA
genomic: CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAGgtctcttagc ... atgttgacagGGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGAAGTTTCAGTA
EST: gi|351028317|gb|FQ427213.1|FQ427213
EST:     CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAG                         GGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGGAGTTTCAGTA
genomic: CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAGgtctcttagc ... atgttgacagGGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGAAGTTTCAGTA
EST: gi|349828483|gb|FQ417225.1|FQ417225
EST:     CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAG                         GGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGGAGTTTCAGTA
genomic: CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAGgtctcttagc ... atgttgacagGGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGAAGTTTCAGTA
EST: gi|161718885|gb|FC066368.1|FC066368
EST:     CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAG                         GGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGGAGTTTCAGTA
genomic: CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAGgtctcttagc ... atgttgacagGGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGAAGTTTCAGTA
EST: gi|110711494|gb|EE088039.1|EE088039
EST:     CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAG                         GGCAAGTCCAATGCTTCTCTAAAGGAGACGAGTTTCTTTGGAGTTTCAGTA
genomic: CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAGgtctcttagc ... atgttgacagGGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGAAGTTTCAGTA
EST: gi|351055571|gb|FQ452036.1|FQ452036
EST:     CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAG                         GGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGGAGTTTCAGTA
genomic: CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAGgtctcttagc ... atgttgacagGGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGAAGTTTCAGTA
EST: gi|351037337|gb|FQ460536.1|FQ460536
EST:     CCCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAG                         GGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGGAGTTTCAGTA
genomic: CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAGgtctcttagc ... atgttgacagGGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGAAGTTTCAGTA
EST: gi|351038373|gb|FQ461065.1|FQ461065
EST:     CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAG                         GGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGGAGTTTCAGTA
genomic: CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAGgtctcttagc ... atgttgacagGGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGAAGTTTCAGTA
EST: gi|110726737|gb|EE102779.1|EE102779
EST:     ATCCACAAAGAG                         GGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGGAGTTTCAGTA
genomic: ATCCACAAAGAGgtctcttagc ... atgttgacagGGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGAAGTTTCAGTA
EST: gi|351038771|gb|FQ464637.1|FQ464637
EST:     CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAG                         GGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGGAGTTTCAGTA
genomic: CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAGgtctcttagc ... atgttgacagGGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGAAGTTTCAGTA
EST: gi|351038585|gb|FQ464451.1|FQ464451
EST:     CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAG                         GGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGGAGTTTCAGTA
genomic: CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAGgtctcttagc ... atgttgacagGGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGAAGTTTCAGTA
EST: gi|351047090|gb|FQ454700.1|FQ454700
EST:     CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAG                         GGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGGAGTTTCAGTA
genomic: CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAGgtctcttagc ... atgttgacagGGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGAAGTTTCAGTA
EST: gi|352790520|gb|FQ478160.1|FQ478160
EST:     CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAG                         GGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGGAGTTTCAGTA
genomic: CTCTCCAAGCAGCCTCATTACTTCCCTCGGCTGTCTCCATCCACAAAGAGgtctcttagc ... atgttgacagGGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGAAGTTTCAGTA