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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCGTTGGGTTCCCACCGCAGGGCTCCCGTGATCGTATCTCCCAAGGCTGTTTCCGACTCCAGGAATTCGCAGACATGTCTGGACCCCGACGCCAGCCGGgtcagtctcaccttccaaaccctcttgtgttttattggggttttgtgatgtttctaatggtctgggtgttttggtttgcgatcttctctgtgcag

Basic information

species Vitis vinifera
transcript Vv12s0057g01480.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110720682|gb|EE096820.1|EE096820
EST:     TTTCCGACTCCAGGAATTCGCAGACATGTCTGGACCCCGACGCCAGCCGG                         AGTGTTCTTGGGATTATTCTGGGAGGTGGAGCAGGCACGCGGCTCTACCCT
genomic: TTTCCGACTCCAGGAATTCGCAGACATGTCTGGACCCCGACGCCAGCCGGgtcagtctca ... ctctgtgcagAGTGTTCTTGGGATTATTCTGGGAGGTGGAGCAGGCACGCGGCTCTACCCT
EST: gi|71857639|gb|DT006694.1|DT006694
EST:     TTTCCGACTCCAGGAATTCGCAGACATGTCTGGACCCCGACGCCAGCCGG                         AGTGTTCTTGGGATTATTCTGGGAG
genomic: TTTCCGACTCCAGGAATTCGCAGACATGTCTGGACCCCGACGCCAGCCGGgtcagtctca ... ctctgtgcagAGTGTTCTTGGGATTATTCTGGGAG
EST: gi|28967738|gb|CB346771.1|CB346771
EST:     TTTCCGACTCCAGGAATTCGCAGACATGTCTGGACCCCGACGCCAGCCGG                         AGTGTTCTTGGGATTATTCTGGGAGGTGGGGCAGGCACGCGGCTCTACCCT
genomic: TTTCCGACTCCAGGAATTCGCAGACATGTCTGGACCCCGACGCCAGCCGGgtcagtctca ... ctctgtgcagAGTGTTCTTGGGATTATTCTGGGAGGTGGAGCAGGCACGCGGCTCTACCCT
EST: gi|352764496|gb|FQ472853.1|FQ472853
EST:     TTTCCGACTCCAGGAATTCGCAGACATGTCTGGACCCCGACGCCAGCCGG                         AGTGTTCTTGGGATTATTCTGGGAGGTGGAGCAGGCACGCGGCTCTACCCT
genomic: TTTCCGACTCCAGGAATTCGCAGACATGTCTGGACCCCGACGCCAGCCGGgtcagtctca ... ctctgtgcagAGTGTTCTTGGGATTATTCTGGGAGGTGGAGCAGGCACGCGGCTCTACCCT
EST: gi|352769779|gb|FQ468707.1|FQ468707
EST:     TTTCCGACTCCAGGAATTCGCAGACATGTCTGGACCCCGACGCCAGCCGG                         AGTGTTCTTGGGATTATTCTGGGAGGTGGAGCAGGCACGCGGCTCTACCCT
genomic: TTTCCGACTCCAGGAATTCGCAGACATGTCTGGACCCCGACGCCAGCCGGgtcagtctca ... ctctgtgcagAGTGTTCTTGGGATTATTCTGGGAGGTGGAGCAGGCACGCGGCTCTACCCT
EST: gi|352776771|gb|FQ472658.1|FQ472658
EST:     TTTCCGACTCCAGGAATTCGCAGACATGTCTGGACCCCGACGCCAGCCGG                         AGTGTTCTTGGGATTATTCTGGGAGGTGGAGCAGGCACGCGGCTCTACCCT
genomic: TTTCCGACTCCAGGAATTCGCAGACATGTCTGGACCCCGACGCCAGCCGGgtcagtctca ... ctctgtgcagAGTGTTCTTGGGATTATTCTGGGAGGTGGAGCAGGCACGCGGCTCTACCCT
EST: gi|110718448|gb|EE095289.1|EE095289
EST:     TTTCCGACTCCAGGAATTCGCAGACATGTCTGGACCCCGACGCCAGCCGG                         AGTGTTCTTGGGATTATTCTGGGAGGTGGAGCAGGCACGCGGCTCTACCCT
genomic: TTTCCGACTCCAGGAATTCGCAGACATGTCTGGACCCCGACGCCAGCCGGgtcagtctca ... ctctgtgcagAGTGTTCTTGGGATTATTCTGGGAGGTGGAGCAGGCACGCGGCTCTACCCT
EST: gi|71860740|gb|DT009795.1|DT009795
EST:     TTTCCGACTCCAGGAATTCGCAGACATGTCTGGACCCCGACGCCAGCCGG                         AGTGTTCTTGGGATTATTCTGGGAGGTGGAGCAGGCACGCGGCTCTACCCT
genomic: TTTCCGACTCCAGGAATTCGCAGACATGTCTGGACCCCGACGCCAGCCGGgtcagtctca ... ctctgtgcagAGTGTTCTTGGGATTATTCTGGGAGGTGGAGCAGGCACGCGGCTCTACCCT
EST: gi|110685530|gb|EE062331.1|EE062331
EST:     TTTCCGACTCCAGGAATTCGCAGACATGTCTGGACCCCGACGCCAGCCGG                         AGTGTTCTTGGGATTATTCTGGGAGGTGGAGCANGCACGCGGCTCTACCCT
genomic: TTTCCGACTCCAGGAATTCGCAGACATGTCTGGACCCCGACGCCAGCCGGgtcagtctca ... ctctgtgcagAGTGTTCTTGGGATTATTCTGGGAGGTGGAGCAGGCACGCGGCTCTACCCT
EST: gi|71875984|gb|DT025039.1|DT025039
EST:     TTTCCGACTCCAGGAATTCGCAGACATGTCTGGACCCCGACGCCAGCCGG                         AGTGTTCTTGGGATTATTCTGGGAGGTGGAGCAGGCACGCGGCTCTACCCT
genomic: TTTCCGACTCCAGGAATTCGCAGACATGTCTGGACCCCGACGCCAGCCGGgtcagtctca ... ctctgtgcagAGTGTTCTTGGGATTATTCTGGGAGGTGGAGCAGGCACGCGGCTCTACCCT
EST: gi|294966255|gb|GW837506.1|GW837506
EST:     TTTCCGACTCCAGGAATTCGCAGACATGTCTGGACCCCGACGCCAGCCGG                         AGTGTTCTTGGGATTATTCTGGGAGGTGGAGCAGGCACGCGGCTCTACCCT
genomic: TTTCCGACTCCAGGAATTCGCAGACATGTCTGGACCCCGACGCCAGCCGGgtcagtctca ... ctctgtgcagAGTGTTCTTGGGATTATTCTGGGAGGTGGAGCAGGCACGCGGCTCTACCCT
EST: gi|352777902|gb|FQ466955.1|FQ466955
EST:     TTTCCGACTCCAGGAATTCGCAGACATGTCTGGACCCCGACGCCAGCCGG                         AGTGTTCTTGGGATTATTCTGGGAGGTGGAGCAGGCACGCGGCTCTACCCT
genomic: TTTCCGACTCCAGGAATTCGCAGACATGTCTGGACCCCGACGCCAGCCGGgtcagtctca ... ctctgtgcagAGTGTTCTTGGGATTATTCTGGGAGGTGGAGCAGGCACGCGGCTCTACCCT
EST: gi|33406108|gb|CF211735.1|CF211735
EST:     TTTCCGACTCCAGGAATTCGCAGACATGTCTGGACCCCGACGCCAGCCGG                         AGTGTTCTTGGGATTATTCTGGGAGGTGGAGCAGGCACGCGGCTCTACCCT
genomic: TTTCCGACTCCAGGAATTCGCAGACATGTCTGGACCCCGACGCCAGCCGGgtcagtctca ... ctctgtgcagAGTGTTCTTGGGATTATTCTGGGAGGTGGAGCAGGCACGCGGCTCTACCCT
EST: gi|352782072|gb|FQ469370.1|FQ469370
EST:     TTTCCGACTCCAGGAATTCGCAGACATGTCTGGACCCCCACGCCAGCCGG                         AGTGTTCTTGGGATTATTCTGGGAGGTGGAGCAGGCACGCGGCTCTACCCT
genomic: TTTCCGACTCCAGGAATTCGCAGACATGTCTGGACCCCGACGCCAGCCGGgtcagtctca ... ctctgtgcagAGTGTTCTTGGGATTATTCTGGGAGGTGGAGCAGGCACGCGGCTCTACCCT
EST: gi|71856436|gb|DT005491.1|DT005491
EST:     TTTCCGACTCCAGGAATTCGCAGACATGTCTGGACCTCGACGCCAGCCGG                         AGTGTTCTTGGGATTATTCTG
genomic: TTTCCGACTCCAGGAATTCGCAGACATGTCTGGACCCCGACGCCAGCCGGgtcagtctca ... ctctgtgcagAGTGTTCTTGGGATTATTCTG